PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g077320.1 | ||||||||
Common Name | MTR_1g077320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 160aa MW: 18728.7 Da PI: 10.3415 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.3 | 3.4e-12 | 10 | 47 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 + +n+s r+ ++ kR++ i+KK EL +LC++ ++ ii Medtr1g077320.1 10 FMSNDSARKASYKKRKKSIIKKVRELTILCGIPACAII 47 679********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.6E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.241 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-19 | 1 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-11 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTRKKVKLAF MSNDSARKAS YKKRKKSIIK KVRELTILCG IPACAIISDP FDSKTEVWPN 60 LKEAKQVIER YQNSYMKDER KNVNQESFLL QQIAKARDQL RKQRQDNREN ELNIRMIWYL 120 QNNTVPDDMT VSDLRDLDKL ITKNMKEIDD KMASLSLSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFMSNDSARKASYKKRK |
2 | 21 | 25 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g077320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209530 | 0.0 | AC209530.2 Medicago truncatula chromosome 7 BAC clone mte1-84j4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468829.1 | 1e-112 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A072VMQ1 | 1e-111 | A0A072VMQ1_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES77546 | 2e-91 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13237 | 9 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-32 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g077320.1 |
Entrez Gene | 25484530 |
Publications ? help Back to Top | |||
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