PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g077300.1
Common NameMTR_1g077300
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18520.7 Da    PI: 10.3213
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g077300.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.8e-141047239
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                     +i+n s+r+ t+ kR++gi+KK  EL +LC++ ++ ii
  Medtr1g077300.1 10 FISNASRRKETYKKRKKGIIKKVRELTILCGIPACAII 47
                     8**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.671147IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-20392IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-131050IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MVRKKVKLAF ISNASRRKET YKKRKKGIIK KVRELTILCG IPACAIISDP FDSKTEVWPN  60
LDGVKQVLER YQKSYMKDDK KNVNQETFLL QQITKAREQL RKLTQDNREK EQKIRMKNYM  120
QNMPDDLTVS DLKELDKIIE KNMKELDEKI VALSLSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFISNASRRKETYKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g077300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2403790.0AC240379.2 Medicago truncatula strain A17 clone WTSI_1018-75b20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468828.11e-110agamous-like MADS-box protein AGL80
TrEMBLA0A072VXU81e-109A0A072VXU8_MEDTR; MADS-box transcription factor family protein
STRINGAES875312e-71(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-28AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]