PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g073170.1 | ||||||||
Common Name | MTR_1g073170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 30223.9 Da PI: 7.9428 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+++vk++G g+W++++r g++R +k+c++rw +yl Medtr1g073170.1 22 KGPWTSEEDKLLIEYVKLHGEGRWNSVSRLAGLRRNGKSCRLRWVNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Medtr1g073170.1 75 KGQITQQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119 5778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.035 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.5E-30 | 19 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-16 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.99E-11 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 18.841 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 75 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.94E-10 | 79 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MYSGMMEGNT GWSVIEEDRW RKGPWTSEED KLLIEYVKLH GEGRWNSVSR LAGLRRNGKS 60 CRLRWVNYLR PDLKKGQITQ QEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF 120 KKKNKNPTDA AEKAKNRYFK RQQQQQLKKQ QQQVQMQQQQ LQYNMDMKGI IDLLLEENDY 180 CTSVPSTSQE TQEMVSMYAD TQEQQGCFYS MLNDNNGNVY AHESSNEEIL WDGLWNLDDA 240 LGNSMQLMLQ AKPANVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-28 | 22 | 123 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g073170.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144807 | 0.0 | AC144807.23 Medicago truncatula clone mth2-9j13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590731.1 | 0.0 | transcription repressor MYB6 | ||||
TrEMBL | G7I2P4 | 0.0 | G7I2P4_MEDTR; Myb transcription factor | ||||
STRING | AES60982 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 4e-78 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g073170.1 |
Entrez Gene | 11431201 |
Publications ? help Back to Top | |||
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