PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g072530.2 | ||||||||
Common Name | MTR_1g072530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 304aa MW: 33841.1 Da PI: 5.3565 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.2 | 6e-08 | 199 | 240 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+RR+ri + + L ellP++ s a iL ++Y+k+Lq Medtr1g072530.2 199 DRQRRQRIADNLKALHELLPTP-----HVGSQAYILDDIIDYVKYLQ 240 7********************8.....358****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-11 | 188 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.58E-8 | 189 | 244 | No hit | No description |
PROSITE profile | PS50888 | 11.738 | 190 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-10 | 192 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-4 | 196 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-5 | 198 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEGESNNKEN SSKLASYEAE GTSNHDVSEE HHIQNQYFGR SGIEWNFLPK LPQNNYVEYL 60 SESSCYLPNT ATTAEYNMIG NSHYHTLGSS SSSFNDPGKA DFGFKLIDSS SHDFGVRKRA 120 GLWRSDEGEE EAHKFETGSS QNLHYAEGHA TWTPDSVGDK QYGSQFDHMG VVAAPSLLPN 180 PKSGGSSTKQ KSEKTRYSDR QRRQRIADNL KALHELLPTP HVGSQAYILD DIIDYVKYLQ 240 IQVKELSGSK LQADSNSIPL VFHEGYGHYI KEQVLNEPLE EIMGNLLEVN SAATCQLLEN 300 KGM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g072530.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138293 | 0.0 | BT138293.1 Medicago truncatula clone JCVI-FLMt-15I17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468605.1 | 0.0 | transcription factor bHLH7 isoform X2 | ||||
TrEMBL | A0A072VLC0 | 0.0 | A0A072VLC0_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | AES60927 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 2e-14 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g072530.2 |
Entrez Gene | 11431276 |
Publications ? help Back to Top | |||
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