PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g070870.1
Common NameMTR_1g070870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 283aa    MW: 30367.4 Da    PI: 6.2567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g070870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.1e-10131175554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Medtr1g070870.1 131 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 175
                      99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15124185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-15128185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7131175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MANHPSDTPA DDFLEQILGL PNFTSADGTD ASPMMLQLNS GDAASHLGAG GGFHAPVYHL  60
GLSLDQGKGG GFLKPDEASG SGKRFREDLV DTRPKNTFHG QPMPTTVPAA PQPPAMRPRV  120
RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD RAAMLDEIVD YVKFLRLQVK  180
VLSMSRLGGA GAVAPLVTDI PLSSVEEEGS DSGRNQPAWE KWSNDGTEKQ VAKLMEENVG  240
AAMQFLQSKA LCIMPISLAS AIYQSQPSDN SSIVKPETIP PP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.134130.0leaf| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g070870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590536.10.0transcription factor UNE12 isoform X2
SwissprotO227681e-128UNE12_ARATH; Transcription factor UNE12
TrEMBLG7ICM90.0G7ICM9_MEDTR; Basic helix loop helix protein BHLH4
STRINGAES607880.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]