PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g070455.2
Common NameMTR_1g070455
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 361aa    MW: 40710.9 Da    PI: 10.3304
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g070455.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.67.8e-31294351359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++ +tYegeHnh 
  Medtr1g070455.2 294 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDEPTMLMVTYEGEHNHA 351
                      99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.0E-17245290IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.5E-33280352IPR003657WRKY domain
PROSITE profilePS5081129.184287350IPR003657WRKY domain
SuperFamilySSF1182901.31E-26290351IPR003657WRKY domain
SMARTSM007741.6E-37292352IPR003657WRKY domain
PfamPF031061.4E-26294350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEEVEQASRT AVESCHRVLS MLSQPRDQVH HRNLTVETGE AVNRFKKVVS LLHGLDHSRV  60
RKLKNLQNVP YPQTAFLDNP NCKRNIINHH TKNVHFTQTT YPQNSVQELG STLRNPLSLG  120
NPSLELSSNG KSPLHLAQQA ASTHYQFYQP QQQHHHQQQL QQQRLLMQQQ QQQQQMKHQA  180
EMMFRRNTSG ISLNFDKATS STPTMSSTRS FISSLSIDGS VANVDGSSFH LIGAPISSDQ  240
NSQHKRKCSA RGDEGSLKCS SSSKCHCSKK RKHRVKRSIK VPAISNKLAD IPPDDYSWRK  300
YGQKPIKGSP HPRGYYKCSS MRGCPARKHV ERCLDEPTML MVTYEGEHNH AKVPTQPANA  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-192883541075WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.146070.0glandular trichome| leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g070455.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1471250.0BT147125.1 Medicago truncatula clone JCVI-FLMt-9C16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468573.10.0probable WRKY transcription factor 21
RefseqXP_024635718.10.0probable WRKY transcription factor 21
SwissprotO043361e-114WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A072VWY90.0A0A072VWY9_MEDTR; Putative transcription factor WRKY family
STRINGGLYMA02G15920.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.12e-76WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]