PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g069025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Nin-like | ||||||||
Protein Properties | Length: 235aa MW: 27178.2 Da PI: 7.5948 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 66.2 | 4.9e-21 | 125 | 174 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++ +d++k+F+ pi+ AA +++v++T+LK++CR+++I RW hRk++sl Medtr1g069025.1 125 SSLQYDDIKKHFDVPITMAAEKMNVGVTLLKKRCRELNITRWSHRKLRSL 174 68999*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.982 | 115 | 195 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-17 | 127 | 174 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGIAPFDDFF EFDWATQFSY RSNHIYKNDF DDLENFNFNF NLPHLDQNNF EVDQKPLNVV 60 LPELGHYNHK GETVAESGYV EDSVKTGSGF VSFVKKENEW ENQELSLVPL ALPSSSTGII 120 RKRSSSLQYD DIKKHFDVPI TMAAEKMNVG VTLLKKRCRE LNITRWSHRK LRSLMLLIEN 180 LKEKGLTEEI AMLEKPKKML EKLPGMDLND EIKKLRQACF KANYKNRKLI ALCP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g069025.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR956619 | 0.0 | CR956619.7 M.truncatula DNA sequence from clone MTH2-65F22 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024633826.1 | 1e-132 | protein RKD4 | ||||
TrEMBL | A0A396JT22 | 1e-173 | A0A396JT22_MEDTR; Putative transcription factor Nin-like family | ||||
STRING | AES72521 | 1e-152 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 9e-30 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g069025.1 |