PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g063870.1 | ||||||||
Common Name | MTR_1g063870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 206aa MW: 21958.5 Da PI: 7.6424 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.7 | 1e-34 | 44 | 118 | 3 | 77 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 ++ ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a ++++s Medtr1g063870.1 44 PASRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAGPVSTSS 118 56789**********************************************************777773332222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-30 | 48 | 166 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.04 | 49 | 103 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSSSEVVIHT FSQTQSETKP STAVTTTVAT TSSDPNTKLT VRRPASRSTK DRHTKVNGRG 60 RRVRMPPLCA ARIFQLTREL GHRSDGETIE WLLRHAEPSI IAATGTGTVP AGPVSTSSPF 120 TSSSLPSVSC HVQPATTVGP GGGGIFGMAL PMQPPSCRLD LSQPAGMDYG TASRYHHMPF 180 TTLLLQPTTT GEENQQEDEE SLNEQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g063870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC153725 | 0.0 | AC153725.3 Medicago truncatula clone mth2-78c5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590456.1 | 1e-149 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 5e-39 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | G7IA90 | 1e-147 | G7IA90_MEDTR; Putative transcription factor TCP family | ||||
STRING | AES60707 | 1e-148 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 5e-36 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g063870.1 |
Entrez Gene | 11430513 |
Publications ? help Back to Top | |||
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