PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g062940.1 | ||||||||
Common Name | MTR_1g062940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 219aa MW: 25855.7 Da PI: 5.7645 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.3e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+l+ v++lG ++W++ a+ g++R++k+c++rw++yl Medtr1g062940.1 8 KGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYL 55 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 62 | 106 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++ eE+ l+v++ +q+G++ W++Iar+++ gRt++++k++w+++l Medtr1g062940.1 62 GPFNVEEERLIVQLQQQWGNK-WSKIARRLP-GRTDNEIKNYWRTHL 106 78999****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.041 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.6E-27 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-13 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-15 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.49E-9 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.741 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 63 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-11 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MHGGNLRKGT WLQEEDEQLI SFVTRLGERR WDSLAKVAGL RRSGKSCRLR WLNYLRPNLK 60 HGPFNVEEER LIVQLQQQWG NKWSKIARRL PGRTDNEIKN YWRTHLQKRV QVQQGEFMYE 120 VENLARDFKN KSIDVVSNSE GETKESSIDS CPLSDWGMRN SPYHESRISD WIEELQNGFG 180 DKEMELGQEF NSINGSIYDY NPQQEYDTWD YSGFLWDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-25 | 6 | 110 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-24 | 4 | 111 | 2 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-24 | 4 | 111 | 2 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 5e-25 | 6 | 110 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-25 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-25 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g062940.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468124.2 | 1e-161 | transcription factor MYB27 | ||||
Swissprot | Q9SCP1 | 2e-56 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A396JN59 | 1e-160 | A0A396JN59_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | GLYMA13G20880.2 | 2e-88 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 7e-59 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g062940.1 |
Entrez Gene | 25483948 |
Publications ? help Back to Top | |||
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