PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g056810.1 | ||||||||
Common Name | MTR_1g056810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 289aa MW: 32531.2 Da PI: 6.4994 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.1 | 1.4e-36 | 12 | 66 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Medtr1g056810.1 12 PNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 66 58***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.3E-31 | 12 | 66 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 12 | 66 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 14 | 50 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-21 | 14 | 57 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MESEWKANQI SPNCPRCGSS NTKFCYYNNY SLTQPRYFCK GCRRYWTKGG SLRNVPVGGG 60 CRKNRRGNNK TLVRHRSFDS LTFKNSPNSL TTLDNNHSYD PILRTNISSS SSSLVNDRPN 120 IDLALVYANF LNQKPDSHIP DQMRKTNFDP CLENSRLSNV EGGTSSLNLS ELELGFKGCL 180 NLNPEQLPST TVTNFSEFNS MQTLQKDRID HCSNIHDDGL NVNFELPPLP GEEDSPSHDH 240 VLWSNSEMMI NLPFQVTQPP PPFLGPDQIH DADLLIGNWS PFDFPRDA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g056810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 2e-50 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467842.1 | 0.0 | dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A072VIR1 | 0.0 | A0A072VIR1_MEDTR; Dof domain zinc finger protein | ||||
STRING | GLYMA10G10142.1 | 1e-106 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 3e-40 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g056810.1 |
Entrez Gene | 25483685 |
Publications ? help Back to Top | |||
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