PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g055265.1
Common NameMTR_1g055265
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Dof
Protein Properties Length: 113aa    MW: 12094.6 Da    PI: 11.0694
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g055265.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof42.71.2e-1319463562
           zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62
                      C+ryW+kGGalrn+PvG g+rk  k+s
  Medtr1g055265.1 19 HCKRYWAKGGALRNIPVGVGTRKVTKRS 46
                     7**********************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-41838IPR003851Zinc finger, Dof-type
PfamPF027013.4E-81944IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MQDRTTFQPM KQNFPEQEHC KRYWAKGGAL RNIPVGVGTR KVTKRSSSSK RSTTPSSSSP  60
STSSTSSAAK VSASVPETDP TQIHVDPIVR NFGEGLLLTL LSSTTKTKSV TP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g055265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691251e-162AC169125.2 Medicago truncatula chromosome 7 BAC clone mth2-3c24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467810.12e-76dof zinc finger protein DOF3.1
TrEMBLA0A072VJA25e-75A0A072VJA2_MEDTR; Dof domain zinc finger protein
STRINGAES806001e-55(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-06DOF zinc finger protein 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]