PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g052260.1 | ||||||||
Common Name | MTR_1g052260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 159aa MW: 18326.5 Da PI: 8.217 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.7 | 8e-13 | 91 | 154 | 2 | 65 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkak 65 fYn YA++ GFs rksk +++k n+ +++++fvC++e +r ++ ++ + + ++ ra tr+gC+a+ Medtr1g052260.1 91 FYNWYARMHGFSARKSKVRRNKLNE-VVQHNFVCYREEFRVDRFNNnKIRMHEARADTRCGCEAN 154 ********************97776.9*************99988834456679999*****997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-11 | 91 | 155 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MDTNANSREH YMSNSGSAHQ RFNCGIRPGF MKNDNVCKGS NGHRGLDNGC EGTSGIYVNG 60 LEDMGDINFK MLTEDDMKNY QFPNLEVAFT FYNWYARMHG FSARKSKVRR NKLNEVVQHN 120 FVCYREEFRV DRFNNNKIRM HEARADTRCG CEANCCLH* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g052260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024635691.1 | 9e-41 | putative protein FAR1-RELATED SEQUENCE 10 isoform X2 | ||||
TrEMBL | A0A072VHQ0 | 1e-115 | A0A072VHQ0_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES83683 | 3e-36 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3613 | 6 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28530.1 | 3e-08 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g052260.1 |
Entrez Gene | 25483379 |
Publications ? help Back to Top | |||
---|---|---|---|
|