PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g052185.1
Common NameMTR_1g052185
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 279aa    MW: 31712.4 Da    PI: 8.2667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g052185.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000323355123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ Cgk+F++   L  H  +H
  Medtr1g052185.1 33 YECELCGKRFNSGAALGGHKTSH 55
                     99*********999988887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.15E-732104No hitNo description
PROSITE profilePS5015711.5313360IPR007087Zinc finger, C2H2
SMARTSM003550.0623355IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-103358IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SMARTSM003550.1282104IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-682105IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.05582109IPR007087Zinc finger, C2H2
PROSITE patternPS00028083104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRKKNTPYCS FYNPCSSYHS FDDNEKSQRS SIYECELCGK RFNSGAALGG HKTSHRSQPQ  60
NKKQRHNHAV NKDDKDDEKQ KHCCRVCNKV FSSKQALCGH MRCHKRDGKD IHLPTSSSID  120
LSKYLLPISY PTNKGSKRKI IDEDVARTLI KISYDNNHGD SKRLKLSCGD MVNETVKEQT  180
VMQTTGHVRV NDETVVIKEK DGSGNKRLKF SSNSEDISDI DESPETKVKD NNTSIDIEEK  240
KNNNEGETVR EPSHIELKAD RVVMNFDLNE IPMKDETN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g052185.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1212357e-50AC121235.20 Medicago truncatula clone mth2-21k24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VHP50.0A0A072VHP5_MEDTR; C2H2 and C2HC zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15177311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-12C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]