PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g037650.1 | ||||||||
Common Name | MTR_1g037650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Trihelix | ||||||||
Protein Properties | Length: 190aa MW: 21313.8 Da PI: 9.6572 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51 | 3.7e-16 | 37 | 120 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea+++++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ s++p++++l+ Medtr1g037650.1 37 EWSEGAVTTLLEAYESKWVLRNRAKLKGQDWEDVAKHVssrsNSTKSPKTQTQCKNKIESMKKRYRSESASSDV------SSWPLYSRLD 120 5*************************************88777778889999**************99988774......5799999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.0E-20 | 35 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MNEKIENKDQ IQQNQESPRK LQNNIIGSGN ERLKRDEWSE GAVTTLLEAY ESKWVLRNRA 60 KLKGQDWEDV AKHVSSRSNS TKSPKTQTQC KNKIESMKKR YRSESASSDV SSWPLYSRLD 120 LLLRGTGQLS TTTLNNNQAG LVLLEPSSLV MSHAHEEAHQ PLVPPPITTA QNSHGSNGVD 180 KLIKVDFNY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.16368 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g037650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126006 | 0.0 | AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence. | |||
GenBank | CR956402 | 0.0 | CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013466888.1 | 1e-138 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A072VG00 | 1e-137 | A0A072VG00_MEDTR; Myb/SANT-like DNA-binding domain protein | ||||
STRING | AES68737 | 1e-131 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4994 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 4e-60 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g037650.1 |
Entrez Gene | 25482836 |
Publications ? help Back to Top | |||
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