PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g023230.1 | ||||||||
Common Name | MTR_1g023230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | SRS | ||||||||
Protein Properties | Length: 253aa MW: 28225.7 Da PI: 8.2211 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 133.1 | 2.8e-41 | 118 | 228 | 4 | 112 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkq...salsstklss 93 g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++++++ + ++s+r+re++++ + +l++t ++ Medtr1g023230.1 118 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQQQqQFHSSRRHRENQNDPSgasGSLTCTPVP- 210 789****************************************************99888777644556666666644443000344444444. PP DUF702 94 aeskkeletsslPeevsse 112 +++ le ++P+e++s+ Medtr1g023230.1 211 -ITTTGLELGNFPPELNSP 228 .4556788999*****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.0E-37 | 119 | 228 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.0E-27 | 121 | 163 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAGFFSLSSG RGKEEAREQE ENNNNSGNNN NQFVFRNEEI YNKGFEIWPQ QHQQSSFHHH 60 QQQHQQNINN FYSFGVGSSR RNDDNNNNND NVSVSFSDES TRFGLTVMRS SSGGLGGGGM 120 NCQDCGNQAK KDCPHLRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL TSLQQQNQQQ 180 QQQFHSSRRH RENQNDPSGA SGSLTCTPVP ITTTGLELGN FPPELNSPGG VPVCKSECNG 240 CTRRTLCLSN CC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g023230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC160013 | 0.0 | AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589349.3 | 1e-167 | LOW QUALITY PROTEIN: protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | G7I5W0 | 0.0 | G7I5W0_MEDTR; Zinc finger, LRP1 type protein | ||||
STRING | AES59600 | 1e-162 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 5e-35 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g023230.1 |
Entrez Gene | 11419224 |
Publications ? help Back to Top | |||
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