PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021440.3
Common NameMTR_1g021440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 285aa    MW: 32151.3 Da    PI: 9.0979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021440.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.57.9e-2129112898
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++ ++l lpk+f ++ +  k+ +  +tl+ +sg +W++ l  + +++++++ +GW++Fvk++ Lke+Df+vFk++g+s f   v +f+
  Medtr1g021440.3  29 TTDFQ-QQLALPKTFSDNLK--KKLPENVTLKGPSGAVWDIGL--TTRDNTVYFVGGWERFVKDHSLKENDFLVFKYNGESLF--EVLIFD 112
                      44444.46*******85555..558889***************..99999***************************998888..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-2518113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.22721114IPR003340B3 DNA binding domain
CDDcd100177.79E-2222112No hitNo description
Gene3DG3DSA:2.40.330.102.7E-2522112IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-2023114IPR003340B3 DNA binding domain
PfamPF023628.7E-1828112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEVDGSRSWE EDIYWNNFQF IHFTQFLQTT DFQQQLALPK TFSDNLKKKL PENVTLKGPS  60
GAVWDIGLTT RDNTVYFVGG WERFVKDHSL KENDFLVFKY NGESLFEVLI FDGDNFCEKA  120
TSYFVRKCGH AQTEEGGSKV KNTNTSVEEV NTASNGGVDC GSPETFRVRR LDSIRTPLAV  180
PVKTTDKMTL NAFFESASPK ELPVYFPKQP TGQRTKKPAN EVTPGQTKKR GRPPKEEAAQ  240
SRLSSAKDEK KLAQSFTSTF PYFVKIIKTF NVDGPRILVR CSPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.126510.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021440.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1579780.0AC157978.25 Medicago truncatula clone mth2-47l16, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466026.10.0B3 domain-containing protein REM16 isoform X2
SwissprotQ8RYD13e-44REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A072VEM70.0A0A072VEM7_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595300.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-39B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]