PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021410.1
Common NameMTR_1g021410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 362aa    MW: 41123.4 Da    PI: 9.406
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22.1e-20311131199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++l lpk+f ++ ++k   +  +tl+ +sg +W++ l  + ++ ++++t+GW++Fvk++ Lke+Df+vFk++g+s f   v +f++
  Medtr1g021410.1  31 DFQQQLALPKTFSDNLKNK--LPENVTLKGPSGVVWNIGL--TTRDYTVYFTDGWQRFVKDHSLKENDFLVFKYNGESLF--EVLIFDR 113
                      55678*******9655544..7778***************..999999**************************998888..8888886 PP
2B358.31.4e-18249334187
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+l++ +v+ s+ l++p++f ++h   +   ++++tl++++g+ W+v+     k+g+ +++ +GW +Fv++ng++ gD+++F+l+++
  Medtr1g021410.1 249 FVKILKNGNVGGSRTLRIPRRFSAAHlPDD---KTEVTLRNSRGECWTVNSVPYAKRGMlHTFCGGWMSFVRDNGVNFGDTCIFELVSD 334
                      89*********************9996333...458**************96555555679999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-2319114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.66521114IPR003340B3 DNA binding domain
CDDcd100173.54E-2022112No hitNo description
Gene3DG3DSA:2.40.330.105.2E-2422114IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-1822114IPR003340B3 DNA binding domain
PfamPF023622.2E-1732113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-25240343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-25242343IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-20247342No hitNo description
PROSITE profilePS5086313.846249345IPR003340B3 DNA binding domain
PfamPF023624.0E-16249334IPR003340B3 DNA binding domain
SMARTSM010191.2E-16249347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEEDGSRSWE EDIYWNHFQF IHFTLFLSTF DFQQQLALPK TFSDNLKNKL PENVTLKGPS  60
GVVWNIGLTT RDYTVYFTDG WQRFVKDHSL KENDFLVFKY NGESLFEVLI FDRDNFCEKA  120
TSYFVGKCGH AQTEQEGSKA KNNNTSAFNT GVESASPEQI MADAVTKTTP VAVPSQKTSK  180
RTKKKPVIEV TPVQTKKRGR PPKSANSFER SHDLVVCNKE LSESSIVKRK RKEDEKKIAQ  240
SFTSSFPYFV KILKNGNVGG SRTLRIPRRF SAAHLPDDKT EVTLRNSRGE CWTVNSVPYA  300
KRGMLHTFCG GWMSFVRDNG VNFGDTCIFE LVSDYVMQVH IYGVGKESIN NQNGHVKLDN  360
K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.136860.0flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1486860.0BT148686.1 Medicago truncatula clone JCVI-FLMt-16C8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589278.10.0B3 domain-containing protein REM16
TrEMBLG7I5770.0G7I577_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-53B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]