PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021320.2
Common NameMTR_1g021320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 843aa    MW: 94096.4 Da    PI: 8.5317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021320.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.61.5e-2030113796
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      +  +  +++l lpk+f ++ +  k+ +  +tl+ +sg +W+v l  + +++++++t+GW++Fvk++ Lke+Df+vFk++g+s f   v +
  Medtr1g021320.2  30 QTTTDFQQQLALPKTFSDNLK--KKLPGNVTLKGPSGVVWNVGL--TARDDTIYFTNGWQRFVKDHSLKENDFLVFKYNGESLF--EVLI 113
                      444555667*******85555..457779***************..********************************998888..5555 PP
2B356.45.6e-18189272798
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      p+d   +++l lpk+f ++ +  k+ +  +tl+ + g  W++ l    +++++++ +GW++Fv+++ Lk++Df+vF ++g+s f   v +f+
  Medtr1g021320.2 189 PEDF--KQQLALPKTFSDNLN--KKLPENVTLKGPGGVAWKIGL--ITRDDTVYFLNGWQRFVNDHSLKDNDFLVFNYNGESHF--DVLIFD 272
                      4333..3459******85444..558889***************..66666777777**********************99999..888887 PP
3B353.83.4e-17506597195
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k++++ +v + ++l +p +f ++h   +++++++tl +++g++W+v+    ++   +++l +GW +Fv+ n Lk gD+++F+l+g+ e   +
  Medtr1g021320.2 506 FVKIMKTFNVERPRILNIPYEFSKDHL--PNCKIKITLHNLKGEQWTVNSVPrTRLHASHILCGGWLNFVRGNSLKIGDVCIFELIGECEL--R 595
                      8999*******************9996..45999***************9553444555***************************96555..5 PP

                      EE CS
               B3  94 vk 95 
                      v+
  Medtr1g021320.2 596 VR 597
                      55 PP
4B344.82.2e-14730816187
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k++++ +v  s  l +p +f ++h   +++++++tl++++g+ W+v+     ++   +  +++ +GW+ Fv++n+++ gD+++F+l+++
  Medtr1g021320.2 730 FVKIMKKFNVCGSYTLKIPCQFSTAHL--PARNTEVTLRNSRGKCWTVNSVPyvQGE--TtiHTFCGGWNAFVRDNDINFGDTCIFELVSD 816
                      789999999999999********9995..457789**************95433444..3459999*********************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-2322115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.66524117IPR003340B3 DNA binding domain
SMARTSM010192.3E-2025117IPR003340B3 DNA binding domain
CDDcd100175.49E-2125114No hitNo description
Gene3DG3DSA:2.40.330.101.4E-2331115IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-1732113IPR003340B3 DNA binding domain
PROSITE profilePS5086315.227181274IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-22183272IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-16184274IPR003340B3 DNA binding domain
CDDcd100174.40E-19184272No hitNo description
Gene3DG3DSA:2.40.330.109.1E-23184272IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-15192272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-22497598IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-23499599IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21504598No hitNo description
SMARTSM010199.8E-14506602IPR003340B3 DNA binding domain
PfamPF023623.2E-14506598IPR003340B3 DNA binding domain
PROSITE profilePS5086313.817506602IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-22722824IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-23723825IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-16728823No hitNo description
SMARTSM010192.5E-6730829IPR003340B3 DNA binding domain
PfamPF023621.7E-12730816IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028730827IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MGGAGGSSKS WEKEIYWTHF QFIHFIQFLQ TTTDFQQQLA LPKTFSDNLK KKLPGNVTLK  60
GPSGVVWNVG LTARDDTIYF TNGWQRFVKD HSLKENDFLV FKYNGESLFE VLIFHGDSFC  120
EKAASYFVGK CGQAHTEQVC NKGKSSNNSV EEVSTPSNGS VECSLPEKSW EEDIYWTHFQ  180
FIHFTQLLPE DFKQQLALPK TFSDNLNKKL PENVTLKGPG GVAWKIGLIT RDDTVYFLNG  240
WQRFVNDHSL KDNDFLVFNY NGESHFDVLI FDGESFCEKE ASYFVGKCSH TQTELGGSKA  300
NETNNSIEEV NTASSDGGVE CGLYEKFQDL NNIGTPLAVP VETTNEKTFN AGVESDSPEL  360
LIADTVTKTT AIQFPYQPTG KRSKRRRSST SANCCWRALD RVAYNKQHSV TIAVPSQTTG  420
QKTKKPVNEV TPGRSMKRGR QAKTATSGER SIDWVACNKE NSEAANLNRS GKADGHDILS  480
GASLSKLSPH AEKEIAQSFT SSFPYFVKIM KTFNVERPRI LNIPYEFSKD HLPNCKIKIT  540
LHNLKGEQWT VNSVPRTRLH ASHILCGGWL NFVRGNSLKI GDVCIFELIG ECELRVRINE  600
VGKDGLDSQV GKLACRLDVA SHKTSRFMPK KHKISSKCCA EVDLLDKKLS EICQEAALSS  660
ELKKSVRASN TSKKAGLSPK SKASHKKPAV PRKHRIEDAL SSQANDSLKM LFALDEQRVA  720
EAFTSPFPYF VKIMKKFNVC GSYTLKIPCQ FSTAHLPARN TEVTLRNSRG KCWTVNSVPY  780
VQGETTIHTF CGGWNAFVRD NDINFGDTCI FELVSDYIMQ VRISGVGKEG LDHQNGNVKL  840
TS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021320.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484040.0AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589270.20.0uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631135.10.0uncharacterized protein LOC11411561 isoform X1
RefseqXP_024631136.10.0uncharacterized protein LOC11411561 isoform X1
TrEMBLG7I4K40.0G7I4K4_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595210.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-41B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]