PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g021290.1
Common NameMTR_1g021290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 348aa    MW: 39361 Da    PI: 7.0529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g021290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.18e-19361161197
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        +++l lpk+f ++ +  k+ +  +t++ +sg +W++ l  + +++++++t+ W++Fvk++ Lke+Df+vFk++g+s f   v +f
  Medtr1g021290.1  36 DFHHQLALPKTFSDNLK--KKLPENVTIKCPSGIVWNIGL--TARGDTVYFTNSWQQFVKDHSLKENDFLVFKYNGESHF--EVLIF 116
                      45788*******85555..458889***************..99999****************************99999..77776 PP
2B357.13.2e-18163245998
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++++ l lpk+f ++ +  k+ +  +tl+ +sg +W+++l  + ++g +++ +GW++F +++ Lk++Df+v k++g+s f   v +f+
  Medtr1g021290.1 163 TNFERH-LALPKTFSDNLN--KKLPENVTLKGPSGVTWNIRL--TTRDGFVYFVDGWQQFMNDHSLKANDFLVCKYNGESHF--EVLIFD 245
                      456666.9******85444..558889***************..*********************************99999..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-2223118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.31126119IPR003340B3 DNA binding domain
SMARTSM010192.7E-1427119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-2227117IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-1927117No hitNo description
PfamPF023624.4E-1637117IPR003340B3 DNA binding domain
SMARTSM010191.4E-16154247IPR003340B3 DNA binding domain
PROSITE profilePS5086315.072154247IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-22156245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-22158245IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-17162245No hitNo description
PfamPF023623.3E-15164245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEGTQNCVGS TKSLEELIYW THFQFIHFTL FLSITDFHHQ LALPKTFSDN LKKKLPENVT  60
IKCPSGIVWN IGLTARGDTV YFTNSWQQFV KDHSLKENDF LVFKYNGESH FEVLIFNGNS  120
FCEKAASYFV QKCGQAHSPS SGGVEDIYWS YFKFTHFTLL VHTNFERHLA LPKTFSDNLN  180
KKLPENVTLK GPSGVTWNIR LTTRDGFVYF VDGWQQFMND HSLKANDFLV CKYNGESHFE  240
VLIFDGESFC EKEASYFVEK CGHAQTAQGG SNASETNNSI EEVDTDSNGG DSPEQFTDDA  300
VPKTTAIQSP FIPTGKRTKR RRRSPKAAAN WGARAHAWVT CNKQHPG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.182031e-106flower| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g021290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484040.0AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence.
GenBankAC2024880.0AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589268.30.0B3 domain-containing protein REM16
TrEMBLA0A396JGJ90.0A0A396JGJ9_MEDTR; Putative transcription factor B3-Domain family
TrEMBLG7I4K20.0G7I4K2_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGAES595190.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-41B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]