PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g018090.1
Common NameMTR_1g018090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 367aa    MW: 41678.8 Da    PI: 4.5911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g018090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-102903301055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Medtr1g018090.1 290 RKRRERINERLRVLQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 330
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14280345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.339280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-13285340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-12286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-11289334No hitNo description
PfamPF000101.3E-7290330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEPIGTFPEG EWDFFRKMFA SEDHEYYSQQ FLDQNSLLLG ENDGLNNGTQ STFCTAEIGE  60
NERMFYSFDH AHIQNSNYIP QTQENSYNSN SSASDDTNYY FSYPNHVLEN NINNCISNDF  120
RMDENLFASS VPSLNEIVME ENVRMNEDSA SDDHIVEKNG YNTQIMEPFD LHTKHEMQMK  180
LKRKLDVIEV EVPVEEKINN NPKKKPRVSN DGQGCMKNAR SKKNHKVIAS HEEEMTEEIN  240
RGSNGNSSSS NISEDDNASQ ENSGGTTLNS NGKTRASRGS ATDPQSLYAR KRRERINERL  300
RVLQNLVPNG TKVDISTMLE EAVNYVKFLQ TQIKLLSSDD MWMYAPLAYN GLDLGLNLNL  360
NSSLPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g018090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405480.0AC140548.11 Medicago truncatula clone mth2-12n15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589071.20.0transcription factor bHLH85
TrEMBLG7ICC10.0G7ICC1_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES593220.0(Medicago truncatula)
STRINGAES593440.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-37ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]