PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g017490.2
Common NameMTR_1g017490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRF
Protein Properties Length: 521aa    MW: 56188.7 Da    PI: 7.5427
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g017490.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92e-2480124145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Medtr1g017490.2  80 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 124
                      79****************************************985 PP
2QLQ59.69.1e-211046137
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     ++FT++Q+++L++Q+l+yKy+ an+ vP++Ll +i+k
  Medtr1g017490.2 10 GPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIRK 46
                     59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2261146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.0E-151145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.84780124IPR014977WRC domain
PfamPF088799.9E-2181123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MHGGLSGVRG PFTPSQWMEL EHQALIYKYI TANVAVPHHL LIPIRKALDS AGLSSFSTAL  60
LRPNALGWGG FHLGYSNNTD PEPGRCRRTD GKKWRCSRDA VVDQKYCERH MNRGRHRSRK  120
PVEGQSGQAL TTGGTTNTAT TTTSTITPSG SSKQINSAAA SPSSSIVVPG GNTVSNTLSF  180
AHQEHSKNMN SLIGQDNGSS AANTINRMFM NNKENNNTSE TMQDGPALPM LPPTLELKPK  240
ENQPFMIQKQ HISYDESSRN NEFGFVTSDS LLNPSQKTST LLGTRTFGSS SQNPTNRDAG  300
SQQSLRHFID DFPKPHSDHQ HHNRSGGFSW PELDMQSDRT QLSISTPMTS SDFMSFTSSA  360
TNEKLTLSPL RLSREIDPIQ MGLGVGSSAL NNNNESSNNN TTKQANWIPI TWESSMGGPL  420
GEVLHLSNTI TYNANDDHYG SGNNNSSALN LMTDGWDNHN SPPMGSSPTG VLQKTAFGSL  480
SNSSAGSSPR AENNKTTQEG ASLCNDLLGS TLGNNTSFTP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g017490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150366e-61AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465961.10.0growth-regulating factor 1
TrEMBLA0A072VEY40.0A0A072VEY4_MEDTR; Growth-regulating factor
STRINGXP_004498953.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-54growth-regulating factor 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]