PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g017350.1
Common NameMTR_1g017350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 427aa    MW: 46121.8 Da    PI: 6.511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g017350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10269317355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Medtr1g017350.1 269 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 317
                      58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17264334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-11264321No hitNo description
PROSITE profilePS5088815.485266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16267334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7269317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGGEENAMEF QHGNENIMSS CPSSEMDISS VSNMAKTSSD VVNHHQQQHH FMASSAWDNP  60
LVSLSQAHTF GGSSMVSHNE FANANSSYNP LVLENQGMSS TSHLVQYSNL GGMIHKIPSY  120
GSGSFSEMVG SFGQHGSGGE HVANTSGYPI PSQHYNHIKD AGIQRGQING EQSQIEDSIH  180
EDGATGSAPG SGSRRKRGLD QNSTFSPNKN AEGDGVKDSP RKISDGSKEN DKKPKVEQSG  240
KQAKDNSPSG DASKDNFIHV RARRGQATNS HSLAERVRRE KISERMRLLQ ELVPGCNKIT  300
GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNFDVER LLSKDILQSR LGLGIGGFVP  360
GMSSSHPFPN ASFQGNMAGM PSSSTQFPPL PQNALDHDFQ NFYGMGYDPN TALDNLGSNG  420
RLKPEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.97750.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g017350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465951.10.0transcription factor bHLH74 isoform X1
TrEMBLA0A072VPD30.0A0A072VPD3_MEDTR; Putative transcription factor bHLH family
STRINGXP_004498946.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.18e-78bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]