PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g009613.1 | ||||||||
Common Name | MTR_1g009613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 36869.8 Da PI: 10.1904 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2e-31 | 263 | 320 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp+++++tYegeH+h+ Medtr1g009613.1 263 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPTMLIVTYEGEHRHT 320 9************************9888****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.6E-17 | 215 | 259 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-33 | 248 | 320 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.318 | 256 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-26 | 257 | 321 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-36 | 261 | 321 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-26 | 263 | 319 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MAVELMGFPK IDEQKAIQEA ASEGLKGMEH LILTLSHQPT QLNTQLTDHT VSKFKKLISL 60 LNRTGHARFR RAPVHSSSSS APVQPVQIQS TPSPVQTPTV SLPKHFPSPS QAPAPISVRH 120 APASFVQPQS HSMTLDFTKP NDVVLSSNTK NSMVELEFSK DTATFSVSSA SSFMSSAITG 180 DGSVNGKQGS SIFLNPAATP AISGGKPPLS AVPSKKRCHD HGEHSDDVSG SNKCHCVKRR 240 KNRVKRTVRV PAISSKTADI PPDEYSWRKY GQKPIKGSPY PRGYYKCSTV RGCPARKHVE 300 RATDDPTMLI VTYEGEHRHT IQAAMQENAA GIVGLVFEST * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-21 | 259 | 323 | 15 | 78 | Probable WRKY transcription factor 4 |
2ayd_A | 4e-21 | 249 | 321 | 2 | 73 | WRKY transcription factor 1 |
2lex_A | 4e-21 | 259 | 323 | 15 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.3676 | 0.0 | pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g009613.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC150889 | 9e-53 | AC150889.3 Medicago truncatula chromosome 7 clone mte1-61j12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465713.1 | 0.0 | probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 1e-126 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A072VCI7 | 0.0 | A0A072VCI7_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AES58882 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24570.1 | 1e-108 | WRKY DNA-binding protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g009613.1 |
Entrez Gene | 25481863 |