PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1281s0010.1 | ||||||||
Common Name | MTR_1281s0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 113aa MW: 12906.5 Da PI: 9.1141 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.5 | 1.6e-11 | 31 | 110 | 1 | 63 |
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCk 63 +fY +YA+++GFs+r+ ++k k+++++ ++vC+k+g+++ + + + + ++++e+r+gC+ Medtr1281s0010.1 31 DFYGNYAYNTGFSIRTMLKSKInsqnKKSDKVHYLRYVCNKQGFKKGSLLNpnnrptsdsplviEFVKVKEKPEERVGCN 110 6*************98665544445589999***************9988888888888888887778888999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-8 | 31 | 110 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MIHADSSQCY SPSNEESWKS LVFQSIKEIE DFYGNYAYNT GFSIRTMLKS KINSQNKKSD 60 KVHYLRYVCN KQGFKKGSLL NPNNRPTSDS PLVIEFVKVK EKPEERVGCN TD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1281s0010.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147963 | 1e-177 | AC147963.2 Medicago truncatula chromosome 1 clone mth2-42e19, complete sequence. | |||
GenBank | AC166898 | 1e-177 | AC166898.17 Medicago truncatula clone mth2-70l3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013441754.1 | 3e-70 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024626515.1 | 1e-68 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024632961.1 | 2e-68 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A072TP96 | 6e-78 | A0A072TP96_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES61431 | 1e-72 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14214 | 2 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 7e-06 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1281s0010.1 |
Entrez Gene | 25481640 |
Publications ? help Back to Top | |||
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