PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0251s0050.1
Common NameMTR_0251s0050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 273aa    MW: 31594.9 Da    PI: 4.8693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0251s0050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Medtr0251s0050.1 15 KGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 62
                      799*****************99************************97 PP
2Myb_DNA-binding59.47.7e-1968111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+eE+el+++ +k lG++ W+tIa++++ gRt++++k++w++
  Medtr0251s0050.1  68 RGNFTQEEEELIIRMHKNLGNR-WSTIAAELP-GRTDNEVKNYWHT 111
                       89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3211062IPR017930Myb domain
SuperFamilySSF466891.68E-2912109IPR009057Homeodomain-like
SMARTSM007175.9E-111464IPR001005SANT/Myb domain
PfamPF002498.7E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-241669IPR009057Homeodomain-like
CDDcd001677.58E-91762No hitNo description
PROSITE profilePS5129426.55463117IPR017930Myb domain
SMARTSM007172.7E-1767115IPR001005SANT/Myb domain
PfamPF002492.7E-1668111IPR001005SANT/Myb domain
CDDcd001676.93E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MARTPSCDKK SGMRKGTWTA EEDRKLIAYV TRYGCWNWRQ LPKFAGLSRC GKSCRLRWLN  60
YLRPNIKRGN FTQEEEELII RMHKNLGNRW STIAAELPGR TDNEVKNYWH TSLKKRVEHN  120
QITNIEETKS KDIESTQDRD ISFLQVTPPA SSQTLDITGP FSPLSSSSEF SSTDYSDHST  180
TYVDDFGFLD GFIDYVGEKS WDEHSNTPTE IVQNNTNRDF ESFLDAYKES TIDSFWTQPY  240
EADMSHVSSQ LLAPLPMEPE YFSIVYDDDI WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131185109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.222850.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0251s0050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1388501e-148BT138850.1 Medicago truncatula clone JCVI-FLMt-15C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442249.10.0transcription factor MYB13
TrEMBLA0A072TFF00.0A0A072TFF0_MEDTR; Myb-related transcription factor
STRINGXP_004513558.11e-116(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.16e-58myb domain protein 13
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]