PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0246s0050.1
Common NameMTR_4g098035
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 322aa    MW: 36172.2 Da    PI: 6.3216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0246s0050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-11152196554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ +af  L +l+P +     kK +Ka++L  ++++Ik+L
  Medtr0246s0050.1 152 HIMVERKRREKLGQAFIALATLIPDL-----KKKDKASVLADTIKHIKEL 196
                       99************************.....89***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.087147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-14151211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-9152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-10152201No hitNo description
SuperFamilySSF474595.89E-14152210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
EKVGEYIFDE ECYLNLLDAD VVEEFLSRDM ASVIAFEEQR ETLQQCLTTE CISTTLSETF  60
NGETSFESFD FDFENPTKKL KFFDRSDNIT KNFSQQLSAS PSTFQSSQIP SLPNLGNTHF  120
SALQTSKESS KNQNVETKTS QSKRSSAHVK DHIMVERKRR EKLGQAFIAL ATLIPDLKKK  180
DKASVLADTI KHIKELKERL AILEEVGKNT KEDQSMMVCN KPDHCCETES VGDGTAIKVA  240
AKVSGKKMLI RIHCQKHDGL LVKVITEIQS FQLLVVNNRI LAFGDSFHDI TVIAEIGEGY  300
NLTIKELVRN LRMAALKFMS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERKRRE
2156161RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0246s0050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442262.20.0transcription factor bHLH19
RefseqXP_013457519.10.0transcription factor bHLH19
TrEMBLA0A072V0A30.0A0A072V0A3_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES908060.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-39bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]