PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0140s0030.1
Common NameMTR_0140s0030, MTR_0489s0020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 335aa    MW: 37966.3 Da    PI: 7.0961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0140s0030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lv +++q+G+g+W++++   g+ R+ k+c++rw +yl
  Medtr0140s0030.1 15 KGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 62
                      79********************************************97 PP
2Myb_DNA-binding48.91.5e-1568113148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T  E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Medtr0140s0030.1  68 RGNFTDHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-24665IPR009057Homeodomain-like
PROSITE profilePS5129424.4891066IPR017930Myb domain
SuperFamilySSF466893.71E-3012109IPR009057Homeodomain-like
SMARTSM007172.3E-131464IPR001005SANT/Myb domain
PfamPF002496.6E-161562IPR001005SANT/Myb domain
CDDcd001674.14E-111762No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2466118IPR009057Homeodomain-like
PROSITE profilePS5129418.96267117IPR017930Myb domain
SMARTSM007175.0E-1567115IPR001005SANT/Myb domain
PfamPF002491.1E-1368113IPR001005SANT/Myb domain
CDDcd001672.78E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMGRPPCCEK LGIKKGPWTP EEDIILVSYI QQHGPGNWRS VPTNTGLMRC SKSCRLRWTN  60
YLRPGIKRGN FTDHEEKMIV HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLKRKMNKD  120
QSSTDEGVDQ ESRSQLPNKG QWERRLQTDI HMAKQALSEA LSLQHNPTTL GTLPDQMKPS  180
SSFSHSHEHP PNLNIPSPYA SSYENISRLM ETWMKSPNSS AETNSSSIFS NMQGSSCSEG  240
AQSTTQDHHG LNSSKSDYAS RFRSSHEGNN SFNLNTKEGL FFHQEERINI KANMETHVPL  300
TLLEKWLFED GGASHECHEE LINMSLEGTT SDFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251311725128MYB TRANSFORMING PROTEIN
1mse_C1e-25151174105C-Myb DNA-Binding Domain
1msf_C1e-25151174105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.177950.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0140s0030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9377831e-135KJ937783.1 Caragana korshinskii MYBJ2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013441833.10.0myb-related protein 306
RefseqXP_013442559.10.0myb-related protein 306
SwissprotP813921e-106MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A072TFY20.0A0A072TFY2_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES912560.0(Medicago truncatula)
STRINGAET042840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-104myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]