PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 90161
Common NameMICPUN_90161
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family AP2
Protein Properties Length: 353aa    MW: 37553 Da    PI: 10.6376
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
90161genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384.2e-12653153
    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
           s+++GV+  + +++W+A+I         k+ slg ++t+eeAa+a ++a+ ++
  90161  6 SKFRGVTLFRPTKKWRAQISAG-----GKTTSLGDHDTEEEAARAFDRAAINK 53
           79****77777*******8883.....4*********************9886 PP
2AP232.91.6e-1098143151
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
            s+y+GV+  k++g+W  +I +       k+ +lg f t+e Aa+a+++a+ 
  90161  98 SQYRGVSLLKQTGKWHGQINVG-----GKQLHLGFFATEELAARAYDRAAI 143
            78*******************3.....4********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-13665No hitNo description
PfamPF008478.6E-8655IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-12664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-11763IPR001471AP2/ERF domain
SMARTSM003805.6E-8769IPR001471AP2/ERF domain
PROSITE profilePS5103212.839763IPR001471AP2/ERF domain
PfamPF008472.7E-598143IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1198145IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-999144IPR001471AP2/ERF domain
SMARTSM003805.4E-799164IPR001471AP2/ERF domain
PROSITE profilePS5103212.58999158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MPPKSSKFRG VTLFRPTKKW RAQISAGGKT TSLGDHDTEE EAARAFDRAA INKAGPVAAT  60
NYPITDYAKE MEALQKVSVS ELVATLRAKA RRHGTQTSQY RGVSLLKQTG KWHGQINVGG  120
KQLHLGFFAT EELAARAYDR AAIHKASTEG GVIVTNLDIS EYAHEIEKLQ RMTRKELLSM  180
IADEKKQQQN LANSVQKDDS DGSNGGSGSG SGTDAPAASR RSGKLYRSNR SNRSSASQLT  240
HVGSMPSVRD GSNSPTNQEG GGSHEAPDTS SGEKSGFDAV KLPPARLAAQ EEISKKSPQP  300
TAVAAGLARI EGKVGNKRAI EEAIMPPPSP RSKHRRTKMA PSRAPVSGGF AA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499377.10.0predicted protein
TrEMBLC1DZE40.0C1DZE4_MICCC; Uncharacterized protein
STRINGXP_002499377.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP801966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.37e-26related to AP2.7
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]