PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 80563 | ||||||||
Common Name | MICPUN_80563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | C2H2 | ||||||||
Protein Properties | Length: 79aa MW: 8866.14 Da PI: 9.1592 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.5 | 1.2e-06 | 55 | 77 | 1 | 21 |
EEET..TTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21 +kC+ Cgk F+++++Lk+H r 80563 55 FKCEheGCGKAFKTSEHLKQHAR 77 89*******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 24 | 24 | 49 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 31 | 54 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.73E-11 | 41 | 79 | No hit | No description |
PROSITE profile | PS50157 | 12.944 | 55 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.3E-11 | 55 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.003 | 55 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 57 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MPAQHTTLAQ HGALLHPHDR IRLRACPVPG CDFVTNQGRA RLEKHLATHG SEKPFKCEHE 60 GCGKAFKTSE HLKQHARCH |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001325 | 1e-130 | CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002501289.1 | 4e-52 | predicted protein, partial | ||||
TrEMBL | C1E3G2 | 1e-50 | C1E3G2_MICCC; Uncharacterized protein (Fragment) | ||||
STRING | XP_002501289.1 | 2e-51 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 9e-06 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 80563 |
Entrez Gene | 8242958 |
Publications ? help Back to Top | |||
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