PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 74715 | ||||||||
Common Name | MICPUN_74715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | C2H2 | ||||||||
Protein Properties | Length: 58aa MW: 6634.66 Da PI: 9.0368 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.5 | 2.6e-06 | 1 | 21 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F k L +H +tH 74715 1 CETCGKTFAEKRFLLKHAKTH 21 ********************9 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 27 | 51 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C C + F ++s LkrH tH 74715 27 YTCAfeGCAMGFLDSSKLKRHWLTH 51 99*********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 14 | 1 | 21 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.74E-11 | 1 | 51 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-8 | 1 | 26 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.671 | 1 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1 | 21 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.3 | 27 | 51 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-11 | 27 | 51 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.349 | 27 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 51 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
CETCGKTFAE KRFLLKHAKT HDTDRPYTCA FEGCAMGFLD SSKLKRHWLT HPGVGHLR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001325 | 2e-92 | CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002501692.1 | 1e-36 | predicted protein, partial | ||||
TrEMBL | C1E3J6 | 2e-35 | C1E3J6_MICCC; Uncharacterized protein (Fragment) | ||||
STRING | XP_002501692.1 | 4e-36 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15267 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 74715 |
Entrez Gene | 8242590 |
Publications ? help Back to Top | |||
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