PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 74639 | ||||||||
Common Name | MICPUN_74639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | MYB | ||||||||
Protein Properties | Length: 102aa MW: 12119.7 Da PI: 9.3268 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 2 | 48 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l+++v+++G++ W++Iar + R +kqc+++w+++l 74639 2 KGLWTPEEDAHLLRLVEEHGTKEWSKIARLLH-MRDGKQCREHWHNHL 48 678*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 60.2 | 4.5e-19 | 54 | 96 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+WT+eE+ l+ ++++lG++ W Ia++++ gRt++ +k++w+ 74639 54 RGPWTEEEERALIAVHEKLGNR-WVDIAAEIP-GRTDNAVKNHWN 96 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.918 | 1 | 48 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-14 | 1 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.99E-32 | 2 | 95 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 3 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.7E-19 | 5 | 62 | No hit | No description |
CDD | cd00167 | 4.65E-12 | 5 | 48 | No hit | No description |
PROSITE profile | PS51294 | 27.191 | 49 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-18 | 53 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.13E-11 | 56 | 99 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 56 | 101 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
IKGLWTPEED AHLLRLVEEH GTKEWSKIAR LLHMRDGKQC REHWHNHLQP DIKRGPWTEE 60 EERALIAVHE KLGNRWVDIA AEIPGRTDNA VKNHWNATKK RR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-40 | 1 | 102 | 6 | 107 | B-MYB |
1mse_C | 4e-40 | 1 | 102 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-40 | 1 | 102 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001334 | 1e-146 | CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002506797.1 | 1e-68 | predicted protein, partial | ||||
Swissprot | Q9LVW4 | 6e-42 | MY118_ARATH; Transcription factor MYB118 | ||||
TrEMBL | C1EIQ8 | 3e-67 | C1EIQ8_MICCC; Uncharacterized protein (Fragment) | ||||
STRING | XP_002506797.1 | 5e-68 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 2e-44 | myb domain protein 118 |
Link Out ? help Back to Top | |
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Phytozome | 74639 |
Entrez Gene | 8249579 |
Publications ? help Back to Top | |||
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