PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

64855

Common Name

MICPUN_64855

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Nin-like

Protein Properties

Length: 1037aa MW: 106520 Da PI: 6.2948

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
64855	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.8	1e-23	585	632	4	51
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 i+le+l+k+Fs+++k+AAk+Lgv+ T+LKriCR++GI+RWP+R +ks 64855 585 GITLEMLQKHFSKHLKEAAKDLGVGSTTLKRICRHFGISRWPRRSLKS 632 69********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.255	572	653	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-21	586	632	IPR003035	RWP-RK domain
SMART	SM00666	1.0E-5	956	1035	IPR000270	PB1 domain
SuperFamily	SSF54277	2.13E-10	956	1028	No hit	No description
CDD	cd05992	1.35E-10	957	1033	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.8E-12	958	1032	No hit	No description
PROSITE profile	PS51745	13.823	958	1033	IPR000270	PB1 domain
Pfam	PF00564	1.9E-7	959	1032	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1037 aa Download sequence Send to blast
MPSATKNATA VDAGGVREDL WNFGDEVGLD EFLSNIPDGD EVSALGGVEK GKRGGNGLGN 60 WDVLDEALSA DIQSSAPVEV PGKKKSPPSS DLRPETPKGA QGDSGFGGSP GADRDSNGSH 120 GGSGPGASKS GTSSGYVGSA NDGDEAALDG LGKLSTALEM VRSQQIGAGN AHMGAAPDIS 180 MDAQVLLTRL QKMLESVSQC VKLGSLVQMF VPKVDNSSGV VTLVTHRALA RVSSVHDKKF 240 WQYHKVSESF FFSLSPSSSE GLLGLPGRCF LYGRTEWTPS VCCYRPMEYP RLQCAIECQV 300 NSTLVVPLFI SNSVSEEIPF AVMEIVMDRQ TMLPGTLFET VAAAIRSHGF YTCDTSCLGS 360 PATMRKMVAD TVDSLCESNS QALAHMCRSL GMLLAQCWLP DSTGEWLIAS GAPFCMGDVM 420 TLPYRQLSEQ VTLRRGQGPV GRAMEKGGIV WVDDVQNGSQ VEWPLHHATA LLGLHGMCAC 480 RVLVQKKDGE KTEAVLELYF PGNLKSPEQQ QPCVDAVWNH LHGSSTLSML GSAGDSENPG 540 AGVQPIPTDI SNVDPSFGGL LSDVNAPKYD YGVAGGAGDA KPPWGITLEM LQKHFSKHLK 600 EAAKDLGVGS TTLKRICRHF GISRWPRRSL KSKQGRLQNA LKTLSAEGAL PPGQFGIHAS 660 GTYMGQPGTS AFNDGLDTDS PGGSMHDGSS FGGSMHGGSS YGGSMHGSMH AGLNFPPGAQ 720 SFGGSAHAGA QFGGGGAMGG SMGGSMGGSM GGAMAAGGSI RAGSNLGGLK RDSGGVAFGH 780 GGGGKARGVS WHGGDGALRM MARNEYVGGG LGPGADGGGL NIPSVNPLRG NSFHGANGGH 840 FGASPTGLPG MMHARNGSFG GGGASFGGQS SSPGRGAGGS GDFGGMWSSF ESAGTNLGLE 900 EGGGGGGGGG GGRAHGGSAA GSLLRQSSSM QARDGGSMAE DFLAVSGNGA APNLAALTVK 960 VSVSNGDNVR FKLLPGMAYA DVQARLRESI EGQIGDMRLR YQDEDDEWCA LNGDSDLAEC 1020 IQVCQSRGMV RMQAAR*

Sequence ? help Back to Top

Protein Sequence Length: 1037 aa Download sequence Send to blast

MPSATKNATA VDAGGVREDL WNFGDEVGLD EFLSNIPDGD EVSALGGVEK GKRGGNGLGN  60
WDVLDEALSA DIQSSAPVEV PGKKKSPPSS DLRPETPKGA QGDSGFGGSP GADRDSNGSH  120
GGSGPGASKS GTSSGYVGSA NDGDEAALDG LGKLSTALEM VRSQQIGAGN AHMGAAPDIS  180
MDAQVLLTRL QKMLESVSQC VKLGSLVQMF VPKVDNSSGV VTLVTHRALA RVSSVHDKKF  240
WQYHKVSESF FFSLSPSSSE GLLGLPGRCF LYGRTEWTPS VCCYRPMEYP RLQCAIECQV  300
NSTLVVPLFI SNSVSEEIPF AVMEIVMDRQ TMLPGTLFET VAAAIRSHGF YTCDTSCLGS  360
PATMRKMVAD TVDSLCESNS QALAHMCRSL GMLLAQCWLP DSTGEWLIAS GAPFCMGDVM  420
TLPYRQLSEQ VTLRRGQGPV GRAMEKGGIV WVDDVQNGSQ VEWPLHHATA LLGLHGMCAC  480
RVLVQKKDGE KTEAVLELYF PGNLKSPEQQ QPCVDAVWNH LHGSSTLSML GSAGDSENPG  540
AGVQPIPTDI SNVDPSFGGL LSDVNAPKYD YGVAGGAGDA KPPWGITLEM LQKHFSKHLK  600
EAAKDLGVGS TTLKRICRHF GISRWPRRSL KSKQGRLQNA LKTLSAEGAL PPGQFGIHAS  660
GTYMGQPGTS AFNDGLDTDS PGGSMHDGSS FGGSMHGGSS YGGSMHGSMH AGLNFPPGAQ  720
SFGGSAHAGA QFGGGGAMGG SMGGSMGGSM GGAMAAGGSI RAGSNLGGLK RDSGGVAFGH  780
GGGGKARGVS WHGGDGALRM MARNEYVGGG LGPGADGGGL NIPSVNPLRG NSFHGANGGH  840
FGASPTGLPG MMHARNGSFG GGGASFGGQS SSPGRGAGGS GDFGGMWSSF ESAGTNLGLE  900
EGGGGGGGGG GGRAHGGSAA GSLLRQSSSM QARDGGSMAE DFLAVSGNGA APNLAALTVK  960
VSVSNGDNVR FKLLPGMAYA DVQARLRESI EGQIGDMRLR YQDEDDEWCA LNGDSDLAEC  1020
IQVCQSRGMV RMQAAR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001334	0.0	CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002506888.1	0.0	nit2-like protein 2
TrEMBL	C1EJ95	0.0	C1EJ95_MICCC; Nit2-like protein 2
STRING	XP_002506888.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5474	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	8e-26	Nin-like family protein

Link Out ? help Back to Top
Phytozome	64855
Entrez Gene	8249820

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]