PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 64846
Common NameMICPUN_64846
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family Nin-like
Protein Properties Length: 284aa    MW: 31945.4 Da    PI: 9.7169
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
64846genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK49.48.9e-1668116452
  RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
             +++ ++ls+   l+ ++AAk  ++++T  K +CR++G++RWPhRk++sl
   64846  68 HMTKSTLSQVAMLTEAAAAKLFNMGTTRFKAKCRNLGVDRWPHRKLQSL 116
             68999*****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.58352137IPR003035RWP-RK domain
PfamPF020424.4E-1568116IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPARPYHSSA PKQPRRVPHH LVDKKNTWGK VQTGMRESSC ESSDSEIEFN GASNTEITTA  60
PVAVSSVHMT KSTLSQVAML TEAAAAKLFN MGTTRFKAKC RNLGVDRWPH RKLQSLSNLY  120
TDLKEHMDRS EKGSVKRQQY SNDMAVIKAY SIRLESDLSL LNQFYNGKKA WPDEILKIRQ  180
TIYKKRHAKV LSEKKKKLSH AGKQDQKRQL PVVKCEASDS EVDIKQEASD SEQFSVDTKK  240
STDSLCVVMP ECINDGTLMM RSLESGGAHM VGDKDDYVFW AML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013340.0CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506883.10.0predicted protein
TrEMBLC1EJ860.0C1EJ86_MICCC; Uncharacterized protein
STRINGXP_002506883.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP943444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.17e-12RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]