PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60748
Common NameMICPUN_60748
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C2H2
Protein Properties Length: 510aa    MW: 55063.4 Da    PI: 10.1326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60748genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05151174223
              EET.TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCp.dCgksFsrksnLkrHirt.H 23 
              +Cp  Cg+sF++  +   Hir+ H
    60748 151 PCPyGCGRSFKHATQKAIHIRKvH 174
              6********************999 PP
2zf-C2H219.82.1e-06180204123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              ++C+   Cgk F ++ +Lk+H +tH
    60748 180 FVCKveGCGKAFYSSGDLKSHEKTH 204
              89**********************9 PP
3zf-C2H219.13.6e-06210233123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              ++Cp Cgk  s++  Lk+Hi+  H
    60748 210 FECPTCGKALSSRNALKVHIKAlH 233
              89******************9888 PP
4zf-C2H214.79.2e-05239263123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              +kC+  +Cg+++ ++ +L rH+++H
    60748 239 FKCEvpNCGMTYMTRLDLDRHMKKH 263
              89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.22150174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.692150179IPR007087Zinc finger, C2H2
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-6152176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.21E-17160217No hitNo description
Gene3DG3DSA:3.30.160.601.5E-14177200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.815180209IPR007087Zinc finger, C2H2
SMARTSM003554.7E-4180204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-10201230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-12208263No hitNo description
PROSITE profilePS5015714.357210238IPR007087Zinc finger, C2H2
SMARTSM003550.0016210233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-8232263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.8E-4239263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847239268IPR007087Zinc finger, C2H2
PROSITE patternPS000280241263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEMQNIFNAQ NPALTLSGLN EQTRQLQSMQ GFAAGNQGMA HPSVLIPGFA PHGVPLPQPI  60
SNSLFNEAQT RAAQQMQVQA NAATPTGADG VGSDNMMTYI SGHESGRRVK AEMRRPTTDH  120
PARSPLGKNR RKIVNNVVTK ISTPYSTGHI PCPYGCGRSF KHATQKAIHI RKVHTGERPF  180
VCKVEGCGKA FYSSGDLKSH EKTHSGLKPF ECPTCGKALS SRNALKVHIK ALHTLERPFK  240
CEVPNCGMTY MTRLDLDRHM KKHVKWEQKE EKAKMANLEK RTEKAERKLR QVLEKQVKNQ  300
SGEARGSVNL SAGRLVALAP GEPPPEGAVA YFVPNANGAG MPLDKLDVTY ARGKYRRGSS  360
KSTGGDGTSG MEPSSSLLSR EGEEGDGDDP TVQGATDAQN ALRAAANGTT ADGGNGVVTP  420
VAARKTYKRK ASALAPADNA GDPEAMLRAT KKKLLETRLR REYDQGGFKG AIPFQSWRRG  480
LSTEVCQKFQ DEVDKLVHSG IDGVITEAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ml2_A2e-1914726531144Zinc finger and BTB domain-containing protein 24
6ml3_A2e-1914726531144Zinc finger and BTB domain-containing protein 24
6ml4_A2e-1914726531144Zinc finger and BTB domain-containing protein 24
6ml5_A2e-1914726531144Zinc finger and BTB domain-containing protein 24
6ml6_A2e-1914726531144Zinc finger and BTB domain-containing protein 24
6ml7_A2e-1914726531144Zinc finger and BTB domain-containing protein 24
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507942.10.0predicted protein
TrEMBLC1FG610.0C1FG61_MICCC; Uncharacterized protein
STRINGXP_002507942.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1065024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-14relative of early flowering 6
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]