PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56741

Common Name

MICPUN_56741

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

MYB_related

Protein Properties

Length: 370aa MW: 37737.9 Da PI: 10.2911

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56741	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.4	8.2e-14	57	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++lG+g+W+ I+r++ + Rt+ q+ s+ qky 56741 57 PWTEDEHRLFLLGLQKLGKGDWRGISRHFVQSRTPTQVASHAQKY 101 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.348	50	106	IPR017930	Myb domain
SuperFamily	SSF46689	1.64E-17	52	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-18	53	105	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.7E-11	54	100	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-11	54	104	IPR001005	SANT/Myb domain
CDD	cd00167	1.86E-9	57	102	No hit	No description
Pfam	PF00249	3.9E-11	57	101	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0030307	Biological Process	positive regulation of cell growth
GO:0046686	Biological Process	response to cadmium ion
GO:0048366	Biological Process	leaf development
GO:2000469	Biological Process	negative regulation of peroxidase activity
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MAGLSELVEA ATEGMRKTQS ADPIEENSNQ PPPPTKDDGH LSDSAVAPTR ERKKGVPWTE 60 DEHRLFLLGL QKLGKGDWRG ISRHFVQSRT PTQVASHAQK YFIRQNNLNK RKRRSSLFDI 120 VSEAPAEPAK APEVASKPPA GIPGGLSMAF AAGMPAFPGF NPASMPMPPG FGAHGAVPAA 180 KKAGAGMDEG EKAAAATIAA LAGSPIAAAG FAQAAAAAAG SKGPNPWEVK HAPMGASPPG 240 QHNAQQAAAA AAAAAAANPF AAMMAMGAMG QMGAQMPAPA AWMQGYHQFM QQMAAAGAAH 300 QQAQAARPPM PPPPAGVTFP PNFQGFTPGV FPGAHNVFGN FMNGAMAKPA GEKPETVAKK 360 EGSATAVTA*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MAGLSELVEA ATEGMRKTQS ADPIEENSNQ PPPPTKDDGH LSDSAVAPTR ERKKGVPWTE  60
DEHRLFLLGL QKLGKGDWRG ISRHFVQSRT PTQVASHAQK YFIRQNNLNK RKRRSSLFDI  120
VSEAPAEPAK APEVASKPPA GIPGGLSMAF AAGMPAFPGF NPASMPMPPG FGAHGAVPAA  180
KKAGAGMDEG EKAAAATIAA LAGSPIAAAG FAQAAAAAAG SKGPNPWEVK HAPMGASPPG  240
QHNAQQAAAA AAAAAAANPF AAMMAMGAMG QMGAQMPAPA AWMQGYHQFM QQMAAAGAAH  300
QQAQAARPPM PPPPAGVTFP PNFQGFTPGV FPGAHNVFGN FMNGAMAKPA GEKPETVAKK  360
EGSATAVTA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00551	DAP	Transfer from AT5G47390	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500416.1	0.0	myb family transcription factor
TrEMBL	C1E145	0.0	C1E145_MICCC; Myb family transcription factor
STRING	XP_002500416.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP322	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	2e-28	MYB_related family protein

Link Out ? help Back to Top
Phytozome	56741
Entrez Gene	8241607

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]