PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 56115 | ||||||||
Common Name | MICPUN_56115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 210aa MW: 22896.7 Da PI: 10.2254 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.1 | 5.8e-11 | 127 | 185 | 1 | 59 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 eke+kr +r+ +NR++A+ R+RKka++ Le++ ++e+++ +L ++++l+ e l 56115 127 EKERKRLKRLLRNRVSAQQARERKKAYMSTLEDERRNMETKMAELEAKINTLERENFML 185 89**************************************************9987655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-10 | 127 | 191 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.5E-10 | 127 | 187 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.795 | 129 | 192 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.5E-14 | 131 | 191 | No hit | No description |
SuperFamily | SSF57959 | 1.05E-11 | 131 | 189 | No hit | No description |
CDD | cd14704 | 2.96E-15 | 132 | 182 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 134 | 149 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MDSMFSQFHN GGHMPGQDGL PRHFMADMGD LSGAPGFPPG APLFGSAMAA AADKPTAAQA 60 AAGRLQRASA RQAAKAAMTQ KRKAQAQRKR PAAAEADEDD SDDGEDASVP TKPHEIAKSK 120 YNHVEDEKER KRLKRLLRNR VSAQQARERK KAYMSTLEDE RRNMETKMAE LEAKINTLER 180 ENFMLRQVVK NATQGKTGGK GGQDHEVPA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 128 | 135 | ERKRLKRL |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00117 | ampDAP | Transfer from AT5G11260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP001323 | 0.0 | CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002499597.1 | 1e-151 | bZIP transcription factor | ||||
TrEMBL | C1DXZ6 | 1e-150 | C1DXZ6_MICCC; BZIP transcription factor | ||||
STRING | XP_002499597.1 | 1e-151 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4616 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11260.1 | 2e-13 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 56115 |
Entrez Gene | 8241275 |
Publications ? help Back to Top | |||
---|---|---|---|
|