PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 54162
Common NameMICPUN_54162
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family GATA
Protein Properties Length: 405aa    MW: 39824.9 Da    PI: 8.4633
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
54162genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.83.5e-14269301133
   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
            C+nCg++ Tp WR++  g  +LCnaCGly +k+
  54162 269 CVNCGVSRTPFWRKERVGGGSLCNACGLYLAKN 301
            *****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13263312No hitNo description
PROSITE profilePS5011415.38263312IPR000679Zinc finger, GATA-type
SMARTSM004019.2E-11263314IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-16264312IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.41E-13268311No hitNo description
PROSITE patternPS003440269294IPR000679Zinc finger, GATA-type
PfamPF003204.0E-12269301IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTMSVKLPTQ PPIPRDVSAS FAAATAKDDK EAKQASGGKS TDAGKADASG KAPFVASAGI  60
DAAAIPAFPP AMAGFMQGAK FPLPQVGANP FAPPAGYPPM PVPPPHSGPA GSQPGAAGTA  120
QWNAMLQYYA YYSYLLCNGG MGGPVVDGAV PRVAPPPLVD VTAWRPGAAP GGVPGMPHHA  180
GMPGAPPGMT AAHMQSVAAM VAAMGAGQHA MAAAAAAMAA PHGGKRGDHG KKRERRGDDS  240
GDDASDSGGS SSSKRGKKRG ANGGEQKTCV NCGVSRTPFW RKERVGGGSL CNACGLYLAK  300
NDAPRPAMLW RRGGSGMGAA EGAAAAAAVG SIAGAGAGTD AVPVPTPAAA AFPAAPVPTA  360
TAAATEAEEP AKAEEPAKAE EPAKAEESVE AEPKKEEPAP APAP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499977.10.0predicted protein
TrEMBLC1E0420.0C1E042_MICCC; Uncharacterized protein
STRINGXP_002499977.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.14e-07GATA family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]