PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 107704
Common NameMICPUN_107704
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family GATA
Protein Properties Length: 430aa    MW: 44790.6 Da    PI: 4.9
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
107704genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17391423133
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
             C nCg  kTp+WR gp+g+ktLCnaCG+++rk 
  107704 391 CLNCGQQKTPQWRMGPEGPKTLCNACGVRFRKG 423
             99*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.9E-12384422No hitNo description
SMARTSM004017.7E-10385429IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.965385421IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.0E-14389422IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.9E-15391423IPR000679Zinc finger, GATA-type
CDDcd002023.41E-12391422No hitNo description
PROSITE patternPS003440391416IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAEGPLAWLH PFDSGLHSFP SLDAGTDLLG LPPSNCGVAA KMAFSELAAM DLLRTPSGFD  60
TRAADAQPPE TSRRVTGADA TSAGEKPFAF DAQRAHAGAP STSYVPSEVF SPVNFGDVDV  120
ADALFTKGPL RTLSARTFDA LLNDTSPREN EEWTALQNLP SLPRDLTTVD LGVGCDPDDD  180
DASCAPVAFG DDRPDDVALM DNGDEDGVRL ARARAATARA RAKEARSIAT QKTATATALT  240
IQAKEMLNAA ATVGDADRDP AGVASGLRTP TAMSERGTYW GGYFEGFDAT TALSGDAVSS  300
PAAVGTCGTT AEHVPTAEVR SSSRRSTKRD APFDGPNASD DEESTPSRGG GGSSAKRRRK  360
GEANGVIQVN PRPMATDSII TASGKKMKRG CLNCGQQKTP QWRMGPEGPK TLCNACGVRF  420
RKGLPLDGP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499671.10.0hypothetical protein MICPUN_107704
TrEMBLC1DYD90.0C1DYD9_MICCC; Uncharacterized protein
STRINGXP_002499671.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-14GATA transcription factor 7
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]