PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 107433
Common NameMICPUN_107433, RWP2
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family Nin-like
Protein Properties Length: 772aa    MW: 82438 Da    PI: 4.9554
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
107433genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK78.66.9e-25194243352
  RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
             +ei++e+ls++F+lp ++A+++Lg++lTvLKr+CR++GIkRWP+Rk+ksl
  107433 194 SEITQEELSSCFHLPSEAACRKLGIGLTVLKRQCRKFGIKRWPFRKMKSL 243
             78**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.962179263IPR003035RWP-RK domain
PfamPF020425.0E-19196243IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MEEVTVKVEA GIQPFGRPIA ESAESHEGEE GLLKAEAAKG HDSDKTAGAQ ERAVDESEDD  60
GDDDADYKIV KTDPDNPTTA AVQSPSEGDR GNVSDQVPAR SDGAEEEDDD DDGHGFHEEE  120
DEEHDDENDD DDDGHGEEEE DDTEDAEANL TNLSDLALIA GAANGRAKPK SKPKSAHKDK  180
GGKSAKRRPL RSASEITQEE LSSCFHLPSE AACRKLGIGL TVLKRQCRKF GIKRWPFRKM  240
KSLDRLITNV QAGISPGDQN RTLVKSVEEL EEQKRRMEEC QVLDLDENTK RLQQAYSKAN  300
HKARRMAQAP ELGGLGGLLA LSSKSDKRGS DASTAGVARG DDDHVNSVMS SVLKRAKAGA  360
QILDVAGAIP VLGDPAATIT AAANAIQEYS GGAAALLPST FTGLNPTQQN ILAALASAMN  420
SKEPGDRSSI SAFTTALTNL AAQGKIEVQP EAVAAWQNAA KFYPPQGALT TPTPTQQQRP  480
SDAATNPFAP ALDPADLVDG KRPVTAVTGR WSPARPARKF DATGAPVFDD RGAEVLEELL  540
AQRTKRGRPP KNEASESESS ESESSESESE ESEEEPEPEE EVEGEAGRSG RRRKPNPKYQ  600
EEKTPKKKKT KKKKKEKKEK KRRAKRARTN SAGGDVDDAD PLASLALAAL GAAKTAKPAK  660
ASAVPAEHPA FALAQQKSRT VVSRAPPGAG LHAPRIDKST ITLVVTEHAD RLRDAMLTLA  720
EGGARRWPRE GPDAPATQDE KQAISDAIGV EALKLRDALN EMLLPQGAGR P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1604621PKKKKTKKKKKEKKEKKR
2606622KKKTKKKKKEKKEKKRR
3610620KKKKKEKKEKK
4619624KKRRAK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013290.0CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504292.10.0predicted protein
TrEMBLC1ECA40.0C1ECA4_MICCC; Uncharacterized protein
STRINGXP_002504292.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-18RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]