PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

105915

Common Name

MICPUN_105915

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

MYB_related

Protein Properties

Length: 669aa MW: 64896.1 Da PI: 10.3

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
105915	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	99	143	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+e +++a k++G Wk+I +++g ++++ q++s+ qk+ 105915 99 RERWTEEEHEGFLEALKLHGRA-WKKIEEHIG-TKSAVQIRSHAQKF 143 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-16	93	149	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.609	94	148	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-8	96	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-15	97	146	IPR006447	Myb domain, plants
SMART	SM00717	7.5E-12	98	146	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-13	99	142	IPR001005	SANT/Myb domain
CDD	cd00167	3.28E-9	101	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0046686	Biological Process	response to cadmium ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MSGSQPPWPG FGQVPGGVNP WLGFAPGLNP ASAGDGASLA VGNNAVPVPG AGGPLSGGAF 60 DFALDRAAAQ RALAASASAG GGAAPSSKVR KPYTITKQRE RWTEEEHEGF LEALKLHGRA 120 WKKIEEHIGT KSAVQIRSHA QKFFSKLQRE AQKSGTVDRA GNGDGPSESE STVTVIPPAR 180 PKRKPAHPYP RKAPDPGVHP THSGGIANGA GASMNALKGT FGGVANGGDS NVAAAAAAAF 240 MMAMGNGTAG FGAVDPAAAA AAWPTAASGF PSPLGAPGNL GNAHGGAHGA HAGNPYANAL 300 HSQMLALAQV NPAALALLGA RPQQTQQQQQ QQQQQQAAAA QANAARAQQQ FMAALAMIGG 360 GGGGGGAQQQ PPRVPPAAAP AAPAARQTPG PAPNIFSAML NAVAAGNTAA GAPNAAAPSL 420 SDTAAFANWA AAMGAATNGS AGGLAAANGA AEGEAGPNTA VAGGNADQMA ALANVMMFFP 480 GIPGGAGAGA GAGAGAAVAP PAPAAANGSG GGQQTHSGTG TGTNQTVSEN TGRDDATTKE 540 NRAERKSALE KRKRGGSARD ASDKGGDTAV GDGGREEPRG KRVNSVVAPA IASKGNTAVD 600 EGPHKTSGSG GSGSGGGSGG GSGSSAQTGR RAAQQGFESS SQRENSPNSE KGPNSDKGSD 660 KGDAGVEA*

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MSGSQPPWPG FGQVPGGVNP WLGFAPGLNP ASAGDGASLA VGNNAVPVPG AGGPLSGGAF  60
DFALDRAAAQ RALAASASAG GGAAPSSKVR KPYTITKQRE RWTEEEHEGF LEALKLHGRA  120
WKKIEEHIGT KSAVQIRSHA QKFFSKLQRE AQKSGTVDRA GNGDGPSESE STVTVIPPAR  180
PKRKPAHPYP RKAPDPGVHP THSGGIANGA GASMNALKGT FGGVANGGDS NVAAAAAAAF  240
MMAMGNGTAG FGAVDPAAAA AAWPTAASGF PSPLGAPGNL GNAHGGAHGA HAGNPYANAL  300
HSQMLALAQV NPAALALLGA RPQQTQQQQQ QQQQQQAAAA QANAARAQQQ FMAALAMIGG  360
GGGGGGAQQQ PPRVPPAAAP AAPAARQTPG PAPNIFSAML NAVAAGNTAA GAPNAAAPSL  420
SDTAAFANWA AAMGAATNGS AGGLAAANGA AEGEAGPNTA VAGGNADQMA ALANVMMFFP  480
GIPGGAGAGA GAGAGAAVAP PAPAAANGSG GGQQTHSGTG TGTNQTVSEN TGRDDATTKE  540
NRAERKSALE KRKRGGSARD ASDKGGDTAV GDGGREEPRG KRVNSVVAPA IASKGNTAVD  600
EGPHKTSGSG GSGSGGGSGG GSGSSAQTGR RAAQQGFESS SQRENSPNSE KGPNSDKGSD  660
KGDAGVEA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	611	621	SGSGGGSGGGS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00146	DAP	Transfer from AT1G18330	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001575	0.0	CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002507825.1	0.0	predicted protein
TrEMBL	C1FFH0	0.0	C1FFH0_MICCC; Uncharacterized protein
STRING	XP_002507825.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP454	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	4e-32	MYB_related family protein

Link Out ? help Back to Top
Phytozome	105915
Entrez Gene	8245744

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]