PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 105391 | ||||||||
Common Name | MICPUN_105391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 294aa MW: 31828.8 Da PI: 9.1955 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 6.6e-13 | 164 | 208 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky 105391 164 PWTEEEHRLFLLGLAKFGKGDWRSISRNFVISRTPTQVASHAQKY 208 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 23 | 32 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.52E-5 | 34 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.587 | 36 | 83 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 17.402 | 156 | 213 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.45E-16 | 159 | 214 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-11 | 161 | 211 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 8.3E-17 | 161 | 211 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.0E-11 | 162 | 207 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-11 | 164 | 208 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.41E-10 | 164 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MTTMDPFPNF SLDGLGLELG RGSMGGIDSV IPYEHWTVDE DKHFETSLAQ IGDLDSDDMW 60 GQFSAHIPGK SMVGLKRRFN LLQEDIKNIE SGRVPLPHYE NHDGVLNTEG VVAPAKVDTA 120 PVAPAPATQT NSGGSNGSKS SSKKKGGKAP AAKTSDQERR KGIPWTEEEH RLFLLGLAKF 180 GKGDWRSISR NFVISRTPTQ VASHAQKYFI RLNSLNKKDK RRSSIHDITS VNGAGDSAPN 240 SSQNGQPMPT MVPMQPMASG PMSGNGYYGA PMGNSMGYMQ TPGMQTMYVQ QPM* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP001325 | 0.0 | CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002501238.1 | 0.0 | predicted protein | ||||
Swissprot | Q9FNN6 | 5e-62 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | C1E352 | 0.0 | C1E352_MICCC; Uncharacterized protein | ||||
STRING | XP_002501238.1 | 0.0 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49010.1 | 1e-48 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 105391 |
Entrez Gene | 8242899 |
Publications ? help Back to Top | |||
---|---|---|---|
|