PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

104135

Common Name

MICPUN_104135

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 324aa MW: 34505.5 Da PI: 10.0304

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
104135	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.2	2.8e-08	273	305	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ e++ +LA+ g+t +qV +WF N R + 104135 273 KPYPDDEDKVKLAEASGMTRAQVGNWFINARVR 305 69*****************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.4E-5	252	313	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-21	256	311	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-13	259	313	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.414	263	309	IPR001356	Homeobox domain
Pfam	PF05920	1.5E-16	266	305	IPR008422	Homeobox KN domain
CDD	cd00086	3.15E-10	267	310	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MIGGPSVDAD ADADVLSSAL PTHVSKAAHD PVVAKPPSAR ARVPRRDTPR SPLTRDLFDG 60 GHGTSESDDL DEDDLAAIAR GLEQRTAALK LGVRATHARR IGAVDAALAK LQLAVAGADG 120 AKVHPNTHRA TTSTRLDATD NTHTHADGHR ARSQQDARDR RRLLNRVGVD LAATSRSFGS 180 AVDARVRDAS NKVLRGAPSR FAAEAAASGV ITVGTTTNDK NAKAKGPGGS TKSVKIKPVA 240 DDPDAEVTGE LKFNAQSVKT QPLRDWLLAH FDKPYPDDED KVKLAEASGM TRAQVGNWFI 300 NARVRIWRPM VLRLGEEIER ESD*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001332	0.0	CP001332.1 Micromonas sp. RCC299 chromosome 14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002506210.1	0.0	predicted protein
TrEMBL	C1EH96	0.0	C1EH96_MICCC; Uncharacterized protein
STRING	XP_002506210.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3210	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27220.1	4e-19	BEL1-like homeodomain 5

Link Out ? help Back to Top
Phytozome	104135
Entrez Gene	8248930

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]