PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 102382
Common NameMICPUN_102382
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family AP2
Protein Properties Length: 450aa    MW: 48213.8 Da    PI: 6.803
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
102382genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2271.1e-0859109153
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
             sgy+GV  + k+gr++A+I     +g  ++  lg+f t+e Aa a ++a++++
  102382  59 SGYRGVALHNKSGRYRARITSTAGDG--RQRALGYFETKELAALAWDKAAREI 109
             89****************88843354..999*******************987 PP
2AP222.23.5e-07220267152
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52 
             ++ kGVr +k +  ++A+I+          kr  lg+f t  eAa a++a +++
  102382 220 PKMKGVR-RKGQSIYEARIKMR-----GedKRTCLGRFKTLAEAADAYDAKARE 267
             689***9.554777****9994.....247********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-1159120IPR016177DNA-binding domain
SMARTSM003804.7E-560125IPR001471AP2/ERF domain
PROSITE profilePS5103212.82660119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-1061120IPR001471AP2/ERF domain
PROSITE profilePS510329.48221279IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-7221267IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-8223267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAPNDVDDDD DKPLTEILRG AAGDVNPSGG AGPLAVIGND GGAGAGTYSR GTKRRVGKSG  60
YRGVALHNKS GRYRARITST AGDGRQRALG YFETKELAAL AWDKAAREIG FAPELLNFPD  120
KEEEAKAEAR INGIEELKDL HGGATLATLA LGSTEDSTAN AQAIPGAPVE EEARALIVHK  180
DVTWSHKVST ADKVSTGDSN QTAHDANQAA HDADLEGKEP KMKGVRRKGQ SIYEARIKMR  240
GEDKRTCLGR FKTLAEAADA YDAKAREAGY CVNVCKHFGD HVDSKTLDDI GSPTGTKGIR  300
AISSERAQNM DRGVIPDDLQ AYFDREEAID PRSAKEKRVA ENGGDLFGAF LLDKPGIYKF  360
LGVFKMEAHC VAALKNTIPE WKLKNQERER NGRGAKARKK REQEELLKLE APPAGQATQA  420
EAVTAALPAP TAINGSLQDT TPWQTTGVL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013290.0CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504661.10.0predicted protein
TrEMBLC1ECK40.0C1ECK4_MICCC; Uncharacterized protein
STRINGXP_002504661.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1540922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-06AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]