PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 70234
Common NameMICPUCDRAFT_70234
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family bZIP
Protein Properties Length: 281aa    MW: 31516.3 Da    PI: 10.2203
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
70234genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.1e-11188245158
             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
             eke+kr +r+ +NR++A+  R+RKka++  Le++   L+++  +L +++++l+ e   
   70234 188 EKERKRLKRLLRNRVSAQQARERKKAYMSSLETERRDLDGKFAELESKINTLERENFM 245
             89**************************************************998755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001705.0E-11188248IPR004827Basic-leucine zipper domain
SMARTSM003382.7E-11188252IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.806190253IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-14192252No hitNo description
SuperFamilySSF579598.44E-12192250No hitNo description
CDDcd147043.75E-14193243No hitNo description
PROSITE patternPS000360195210IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MQVDDFAKVP EMDSRLLASS RVVSDSQLLT GGHGTRLEDD NRDKVCNRYR QSSSTQRVEA  60
GDVLSLAMSQ ASVRKLATEH QMSSNSVLDN DKPTAAQAAA GRLQRASARQ AAKAAQQQKR  120
HAHSTPRTSV KRSIECRKKV KHESTLHDGE TQEGFEEVAD LAEDIHSPYK EKQVKAEKTP  180
KKIQVEDEKE RKRLKRLLRN RVSAQQARER KKAYMSSLET ERRDLDGKFA ELESKINTLE  240
RENFMLRQVV QNATRGHSID AVKEKNGILG SAEEARTVPS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189196ERKRLKRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056507.10.0bZIP transcription factor
TrEMBLC1ML740.0C1ML74_MICPC; BZIP transcription factor
STRINGXP_003056507.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46161010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.17e-14bZIP family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]