PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 64177
Common NameMICPUCDRAFT_64177
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family HB-PHD
Protein Properties Length: 302aa    MW: 33897.6 Da    PI: 5.4957
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
64177genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.61.4e-05154217157
               TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl.....gLterqVkvWFqNrRakekk 57 
               ++kR+ ++keql++Le +++   ++  ++e r+++ ++l        +++  +W  NrRakek+
     64177 154 KQKRWYPNKEQLRRLEFYYKHsrSSFKDREGRTQILAELskhgeTKGQAKLHTWSMNRRAKEKR 217
               689*****************64466678999999999999987666678999***********7 PP
2PHD29.31.9e-10260301249
            BTTTSSTCTTSSEEEBSSSSSEEETTTSTSSSSHHSHHSSTBSSHHHH CS
    PHD   2 CkvCgksdeegelvlCdgCkewfHlkClglkleseekpegewlCeeCk 49 
            C+vCg   ++++ ++C++C+  +H +Clgl+  ++    ++++C++C+
  64177 260 CRVCGI--DDDDGMYCEKCNGVYHFACLGLDAPPT----DDYICPSCQ 301
            *****9..688999*****************7744....45******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-4150222IPR009057Homeodomain-like
PROSITE profilePS500719.458151218IPR001356Homeobox domain
SuperFamilySSF579032.21E-13231301IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-11243301IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.947257301IPR019787Zinc finger, PHD-finger
SMARTSM002498.0E-8259301IPR001965Zinc finger, PHD-type
PROSITE patternPS013590260300IPR019786Zinc finger, PHD-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
GTQLSPAKKV VTEVERDTLG THGAQRSGSC LVQTTAIEVL SDEGQRLTSH KGNLEEQNQV  60
IVNALEIIDY PTKTEEIYNR SLYKVRVIDN SDTDEAVART QPLSSHDHGT RFASKALRSA  120
NKDIDTKKDE LEEAEEVVEP AEYDKGSNSE KLIKQKRWYP NKEQLRRLEF YYKHSRSSFK  180
DREGRTQILA ELSKHGETKG QAKLHTWSMN RRAKEKRQAA QEELAKIIDE TRVSVPQQQA  240
VKTPSEGDGA IAEYSNPEAC RVCGIDDDDG MYCEKCNGVY HFACLGLDAP PTDDYICPSC  300
Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209216NRRAKEKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003055916.10.0predicted protein
TrEMBLC1MK220.0C1MK22_MICPC; Predicted protein
STRINGXP_003055916.10.0(Micromonas pusilla)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.18e-07WUSCHEL related homeobox 14
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]