PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57415

Common Name

MICPUCDRAFT_57415

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

YABBY

Protein Properties

Length: 398aa MW: 42955 Da PI: 5.4695

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57415	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	23.5	1.6e-07	21	67	7	51
YABBY 7 seqvCyvqCnfCntilavsvPstslf..kvvtvrCGhCtsllsvnla 51 + + +v+C+ C l v vPs+ + + v+vrCG C +ll v + 57415 21 RGTLVHVDCDRCRSRLEVRVPSSLRVdaRGVAVRCGACETLLQVAVP 67 56799**************987661156**********99875 PP
2	YABBY	57.4	6.2e-18	219	272	110	164
YABBY 110 prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164 pr ++ i e++ r Ps yn fi+eei r+k ++P + hr+af aaaknWah P 57415 219 PRHQK-ILKRERKPRDPSPYNVFIREEIPRLKEKDPGLNHRDAFKAAAKNWAHSP 272 44333.44568999***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-5	23	71	IPR006780	YABBY protein
Pfam	PF04690	2.7E-17	221	272	IPR006780	YABBY protein
SuperFamily	SSF47095	6.15E-7	221	272	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.7E-4	225	272	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MTADASADVA AAVAGLVDDD RGTLVHVDCD RCRSRLEVRV PSSLRVDARG VAVRCGACET 60 LLQVAVPPLL SPSTPGLFAR GEPGDGIGLA PPGSLLSGDR VSGGGGDDDD GGAGAGVAGC 120 GPGRSRASNP EHERHLRLAR YHMDMAAQHS NPSAGHVSFP AMPATSPLAQ LSLPPCEHES 180 DERVDRVLRA AAHEFWWNPS EIPHRGRRDD DDDYYDANPR HQKILKRERK PRDPSPYNVF 240 IREEIPRLKE KDPGLNHRDA FKAAAKNWAH SPLNMRSPAF VPGPTDRPAE RDDDDDERRA 300 GEVDEDDSAA ARAEIMRKLQ PILQSTPTRE EGTDTAAAAA GRGDGDRANE AHESTPRRDS 360 DRDEDADKTS AGERRGTSSH RTKSSEHSTE CKEYTSC*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MTADASADVA AAVAGLVDDD RGTLVHVDCD RCRSRLEVRV PSSLRVDARG VAVRCGACET  60
LLQVAVPPLL SPSTPGLFAR GEPGDGIGLA PPGSLLSGDR VSGGGGDDDD GGAGAGVAGC  120
GPGRSRASNP EHERHLRLAR YHMDMAAQHS NPSAGHVSFP AMPATSPLAQ LSLPPCEHES  180
DERVDRVLRA AAHEFWWNPS EIPHRGRRDD DDDYYDANPR HQKILKRERK PRDPSPYNVF  240
IREEIPRLKE KDPGLNHRDA FKAAAKNWAH SPLNMRSPAF VPGPTDRPAE RDDDDDERRA  300
GEVDEDDSAA ARAEIMRKLQ PILQSTPTRE EGTDTAAAAA GRGDGDRANE AHESTPRRDS  360
DRDEDADKTS AGERRGTSSH RTKSSEHSTE CKEYTSC*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003058189.1	0.0	yabby-like transcription factor
TrEMBL	C1MQU4	0.0	C1MQU4_MICPC; Yabby-like transcription factor
STRING	XP_003058189.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15551	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-13	YABBY family protein

Link Out ? help Back to Top
Phytozome	57415
Entrez Gene	9683255

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]