PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 54493
Common NameMICPUCDRAFT_54493
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family WOX
Protein Properties Length: 600aa    MW: 63451.5 Da    PI: 4.6123
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
54493genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.42.5e-13510569357
               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
               +R++ t+eq  +L elFe  +  p++e++ e++++l     ++er+V +WF NrR  +kk
     54493 510 PRWRATPEQRARLDELFETdDAVPKEERKSEITRELrafgPIEERNVHFWFANRRREKKK 569
               8*****************9899*****************99**************98886 PP
2Wus_type_Homeobox51.13.3e-17509570364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         +RW  tpeQ   L+el+++    P++e+ ++it+eL+++G ie++NV++WF Nr+  +++k
              54493 509 APRWRATPEQRARLDELFETDDAVPKEERKSEITRELRAFGPIEERNVHFWFANRRREKKKK 570
                        68*****************************************************9555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-11505574IPR009057Homeodomain-like
PROSITE profilePS5007113.183505570IPR001356Homeobox domain
SMARTSM003895.0E-5507574IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-9510575IPR009057Homeodomain-like
PfamPF000467.0E-11510569IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MTLTQNWPRL FGRADVLATA LSLSKRLFAL HWDGRQLRLL RLGAVNEIRV KRAAADAWND  60
DHPGELVRVD EWVVVRLGDV LELAPGLTYE VSDATIASVD APVDAPTFEW WKRQRAMEEK  120
RKTQLVVKLA RTEDMDTQED VSAIAASAAA AAPPPPHALT ATGKPDGRRR CGACAGCASK  180
GGRCDVLSKR WHANQAKRRR AEAAYLAARK AARESQRGGG DDDDDDESGN ATSEEEGGEA  240
VEVGGGDADE PEAEAAAAAR AAAALSARRR REDTQNSDGG GGGGGESGGG GGGGGGESGG  300
GGDDDASLTF RGEKTYVDAV VAIEEKERAA ATVAACAVLK QRLLGGPRRL LPPRGFADSD  360
DGSDDSDDDA SDAGVDARHD WPPRHATASA WRAQRNLVYA EETSAAIDAI VTRLVERVAS  420
AVEGSPPPLN VDAADDDVDS FHTPCGGDVF GGRATRPMNY SDPWSVNDAG ESDQESGFLS  480
SLVGVGEANA TTATKTKPAE LPETSPPPAP RWRATPEQRA RLDELFETDD AVPKEERKSE  540
ITRELRAFGP IEERNVHFWF ANRRREKKKK ARDAEAAAAG AGVGGTAGEA VDAPIEIDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064447.10.0predicted protein
TrEMBLC1N9G20.0C1N9G2_MICPC; Predicted protein
STRINGXP_003064447.10.0(Micromonas pusilla)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.13e-08WOX family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]