PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

53433

Common Name

MICPUCDRAFT_53433

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Nin-like

Protein Properties

Length: 733aa MW: 76335.9 Da PI: 5.386

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
53433	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.8	5.9e-25	179	228	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +ei++e+ls++F+lp ++A+++Lg++lTvLKr+CR++GIkRWP+Rk+ksl 53433 179 SEITQEELSSCFHLPSEAACRKLGIGLTVLKRQCRRFGIKRWPFRKMKSL 228 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.019	164	248	IPR003035	RWP-RK domain
Pfam	PF02042	4.9E-19	181	228	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MSANATDLAT APAAAGDPAA PSREGKTPEE GQQAASNDDD ARVKRESNDV NGISDQPPAA 60 EDDAVPAATT PKVGFSVEIV RSDPNADANA DAANAPEGAQ RDRQNSAFST GTTIDHAHDA 120 APPTNEEFED EGEDMMDDGG EDVMDGGDEY ERLLAAADVG GGDGAEKKPA KRRALRSASE 180 ITQEELSSCF HLPSEAACRK LGIGLTVLKR QCRRFGIKRW PFRKMKSLDR LITNVQAGIS 240 PGDQNRTLVK SVEELEEQKR RMEECQVLDL DDNTKRLQQA YSKANHKARR AAAAPEMNGV 300 GGLLALTGGG APSPPPEKKP PRAKKARNQP TSDAVNDSLE AAKAQARLLQ GVAATLPSLL 360 PGGIGDLDSH AVAAAVAAAA AAMSQHAAAP PPVNFAASGG LAAALAAREE KLPPHLRQKG 420 DWVGASVAAA AAAAAAGGRK SQQTVLEAAN PFPPRETTTT PRANDDVSVP VSGAWSPARP 480 ASRQHGEEEE DVEIEAILAR ANAGTTAIKQ EESSGEESES ESEPEPEEEE EVLLPDSRTG 540 RKRKMNPKFK DPKEEKKKKR KKKKKKPPVD ELESLAAAAL AGGLAGKGGR GGRGGRGRGG 600 GRGSRPSGET RGGRITLAAA LAKADALAAR AAAGLRPPQL PEEHPGFAPS QRSRYEAPPA 660 PPPEFGLAGL ALVEPAAPTI DKSAITSLVT EHADRLREVM TRAGVDAQTV AEAIGGEALK 720 LRDALDALLL PA*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MSANATDLAT APAAAGDPAA PSREGKTPEE GQQAASNDDD ARVKRESNDV NGISDQPPAA  60
EDDAVPAATT PKVGFSVEIV RSDPNADANA DAANAPEGAQ RDRQNSAFST GTTIDHAHDA  120
APPTNEEFED EGEDMMDDGG EDVMDGGDEY ERLLAAADVG GGDGAEKKPA KRRALRSASE  180
ITQEELSSCF HLPSEAACRK LGIGLTVLKR QCRRFGIKRW PFRKMKSLDR LITNVQAGIS  240
PGDQNRTLVK SVEELEEQKR RMEECQVLDL DDNTKRLQQA YSKANHKARR AAAAPEMNGV  300
GGLLALTGGG APSPPPEKKP PRAKKARNQP TSDAVNDSLE AAKAQARLLQ GVAATLPSLL  360
PGGIGDLDSH AVAAAVAAAA AAMSQHAAAP PPVNFAASGG LAAALAAREE KLPPHLRQKG  420
DWVGASVAAA AAAAAAGGRK SQQTVLEAAN PFPPRETTTT PRANDDVSVP VSGAWSPARP  480
ASRQHGEEEE DVEIEAILAR ANAGTTAIKQ EESSGEESES ESEPEPEEEE EVLLPDSRTG  540
RKRKMNPKFK DPKEEKKKKR KKKKKKPPVD ELESLAAAAL AGGLAGKGGR GGRGGRGRGG  600
GRGSRPSGET RGGRITLAAA LAKADALAAR AAAGLRPPQL PEEHPGFAPS QRSRYEAPPA  660
PPPEFGLAGL ALVEPAAPTI DKSAITSLVT EHADRLREVM TRAGVDAQTV AEAIGGEALK  720
LRDALDALLL PA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	541	563	KRKMNPKFKDPKEEKKKKRKKKK
2	551	560	PKEEKKKKRK
3	554	566	EKKKKRKKKKKKP
4	555	560	KKKKRK
5	555	562	KKKKRKKK
6	557	561	KKRKK
7	557	565	KKRKKKKKK
8	559	565	RKKKKKK
9	592	602	RGGRGRGGGRG
10	593	600	GGRGRGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063787.1	0.0	predicted protein
TrEMBL	C1N6T4	0.0	C1N6T4_MICPC; Predicted protein
STRING	XP_003063787.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-18	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	53433
Entrez Gene	9689050

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]