PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

48531

Common Name

MICPUCDRAFT_48531

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

bZIP

Protein Properties

Length: 768aa MW: 78356.8 Da PI: 6.5239

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
48531	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.5	2.8e-08	231	289	2	60
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 e k+ r+ +NRe+A+ sRqRKk+ ++eL ++ L+ e +L k + l+ e +l+ 48531 231 DEEKKRARLVRNRESAQLSRQRKKQHMDELDLRCRGLQVECAELHKLAHCLSAENHRLR 289 5779999**************************99999999999988877777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.1E-13	228	290	No hit	No description
SMART	SM00338	1.0E-6	230	294	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-6	231	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.53	232	289	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.55E-9	234	289	No hit	No description
CDD	cd14704	1.59E-21	235	286	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence Send to blast
MTRDETDYLG ELLRGDALPT PTPTPMNARG RKSSNATAGA SARRRGANAT SARGAPSSSQ 60 GSDASGSSRK QRRRGANATS PRGAPWSSQG SDASGSSRGC SDDSSASKAT RAPRTPPHGP 120 TQTPGGGGGA TPSSPRAPPP TTRDHHDVDD LLFVPPDLEA AVKLEGLVDP DDLAFADAFI 180 DDVAGDILFG DGGMLGDAGG VAPGPGSGAN GNGGDGGNGG NGGNGGGEEE DEEKKRARLV 240 RNRESAQLSR QRKKQHMDEL DLRCRGLQVE CAELHKLAHC LSAENHRLRA HCNLVATGKT 300 PPETPPPPPH PYVAAQVGPG GMTHMPITPM MFQPKIPLPP RGGFVAPAPA PAPAAAAAGS 360 NAGSTPSSPA GAANADHEAE LMVATKKRKS NASKGVAAVT AAALAALSVA CLSLGSRSGA 420 GSGGQLALSG VALGGARRHL LAAATSGVFG GDDAAEAVPE RALVAARADL LDATTRATAT 480 ATAATRPPRP TMEMERPAVI PMRGGEREAI PLRGKSREVA LPYDGESSIE TWGATDDDGW 540 IPTTRASSED ARFDAAGDAT KDPWTAAFHR LGHNAETLRE MTCREMFRFN ALDLNAAGGD 600 VAFTRRLSEA AAAEEEEEEG EREGDVKKAT GARGELELPP VAIPLPPRDA GPSESSSSSL 660 VGGSDARRPL PLPLKEERRR TIGDDARSGA GAGAGAGGFG VGDDESSLVS VLLPPPAASA 720 SRVGGAMPTL SKLFVVTRSR RTSEYVTYSC RLPVVDRAAA GATAGWS*

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence Send to blast

MTRDETDYLG ELLRGDALPT PTPTPMNARG RKSSNATAGA SARRRGANAT SARGAPSSSQ  60
GSDASGSSRK QRRRGANATS PRGAPWSSQG SDASGSSRGC SDDSSASKAT RAPRTPPHGP  120
TQTPGGGGGA TPSSPRAPPP TTRDHHDVDD LLFVPPDLEA AVKLEGLVDP DDLAFADAFI  180
DDVAGDILFG DGGMLGDAGG VAPGPGSGAN GNGGDGGNGG NGGNGGGEEE DEEKKRARLV  240
RNRESAQLSR QRKKQHMDEL DLRCRGLQVE CAELHKLAHC LSAENHRLRA HCNLVATGKT  300
PPETPPPPPH PYVAAQVGPG GMTHMPITPM MFQPKIPLPP RGGFVAPAPA PAPAAAAAGS  360
NAGSTPSSPA GAANADHEAE LMVATKKRKS NASKGVAAVT AAALAALSVA CLSLGSRSGA  420
GSGGQLALSG VALGGARRHL LAAATSGVFG GDDAAEAVPE RALVAARADL LDATTRATAT  480
ATAATRPPRP TMEMERPAVI PMRGGEREAI PLRGKSREVA LPYDGESSIE TWGATDDDGW  540
IPTTRASSED ARFDAAGDAT KDPWTAAFHR LGHNAETLRE MTCREMFRFN ALDLNAAGGD  600
VAFTRRLSEA AAAEEEEEEG EREGDVKKAT GARGELELPP VAIPLPPRDA GPSESSSSSL  660
VGGSDARRPL PLPLKEERRR TIGDDARSGA GAGAGAGGFG VGDDESSLVS VLLPPPAASA  720
SRVGGAMPTL SKLFVVTRSR RTSEYVTYSC RLPVVDRAAA GATAGWS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003062567.1	0.0	bZIP superfamily DNA-binding transcription factor
TrEMBL	C1N390	0.0	C1N390_MICPC; BZIP superfamily DNA-binding transcription factor
STRING	XP_003062567.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5392	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	7e-10	bZIP family protein

Link Out ? help Back to Top
Phytozome	48531
Entrez Gene	9687779

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]