PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

48162

Common Name

MICPUCDRAFT_48162

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 284aa MW: 32332 Da PI: 10.0207

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
48162	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	66.6	5.7e-21	26	123	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH...THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeeefakk...vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F++kl+++++d++ ++++sw+++g+sfvv+d + f+kk vLp + n++ F R Ln YgF+k+ ++++ eF+h+ F kg+ l+ 48162 26 FIMKLHTLVSDPSASDVVSWNKDGKSFVVKDAKAFEKKlvgVLPVFPARVNINGFKRELNNYGFHKLGNDDDA------RLEFSHDGFVKGDPAALR 116 9**********************************9444577788899**************99976......89************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 ++ +k++ 48162 117 QVTQKAN 123 *999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.8E-24	22	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.4E-23	22	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.18E-19	23	119	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.5E-21	26	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.6E-8	26	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.6E-8	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MAPTHLHARR PSCNPYAFDR VKVSPFIMKL HTLVSDPSAS DVVSWNKDGK SFVVKDAKAF 60 EKKLVGVLPV FPARVNINGF KRELNNYGFH KLGNDDDARL EFSHDGFVKG DPAALRQVTQ 120 KANVGRFRRE KPQTAAKDMA PVSGFVLKNP FSLADNNNFG RFRRDADWEE KAFNPFDLEN 180 NNNYGRFRRG AKETDVAAAE DMAPVSGFDW KNPFSLADNN NFGRFRRDAN WEEKAFNPFD 240 LADNNNYGRF RRDANWEENA VNPFDLTDNR NYGRFRRAVQ PAA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	2e-13	23	121	4	106	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	2e-13	23	121	4	106	HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061318.1	0.0	heat shock transcription factor
TrEMBL	C1N018	0.0	C1N018_MICPC; Heat shock transcription factor
STRING	XP_003061318.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15382	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	3e-15	heat shock transcription factor B2A

Link Out ? help Back to Top
Phytozome	48162
Entrez Gene	9686489

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]